SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47820 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:19366505-19372229 FORWARD LENGTH=1035 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0007018 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based movement | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010215 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose microfibril organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0244 | KOG | Kinesin-like protein | JGI | ISS | |
| PTHR24115 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24115:SF174 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00225 | PFAM | Kinesin motor domain | JGI | ISS | |
| UniRef100_B9T4T4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromosome-associated kinesin KLP1, putative n=1 Tax=Ricinus communis RepID=B9T4T4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023396F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023396F5 related cluster n=1 Tax=unknown RepID=UPI00023396F5 | SoyBase | E_val: 0 | ISS |
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Glyma17g18540 not represented in the dataset |
Glyma17g18540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g169400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g18540.2 sequence type=CDS gene model=Glyma17g18540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCATCAGAGAAATGCTCTGTGAAAGTCGCTCTTCACATTCGTCCTCTCATTGCCGATGAACGACAACAAGGTTGCATTGAATGTGTTTCCGTTACGCCTTCGAAGCCTCAGGTTCAAATTGGGTCGCATGCCTTTACATTTGATTACGTTTATGGAAATGGTGGATCTCCTTCAGTTGAGATGTTTGAGGAATGCGTTGCTCCATTGGTTGATGGCTTATTCCAAGGATACAATGCTACAGTACTTGCCTATGGTCAGACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGTCGGAGTGGATTAATTCCTCAGGTTATGAATGCGTTGTTCAAGAAGATTGAAACACTAAAGCATCAAACAGAATTTCAGTTGCGAGTCTCCTTCATTGAGATTTTGAAGGAAGAGGTGAGGGACTTGTTCGATAGGGTATCTATGGGCAAACCAGAAACCTCTAACTCTAATGGCCATTCTGGAAAAATAACTGTTCCTGGGAAGTCACCAATACAAATTCGTGAAACATCAAATGGAGTAATAACACTGGCAGGAATAACTGAAGTTGCTGTAAGTACATTACATGAGATGTCTTCTTACTTGGAGCAGGGTTCTTTAAGCAGGGCAACGGGAAGTACAAATATGAACAACCAGTCCAGTCGGTCACATGCCATTTTCACAATTACATTAGAACAGATGCACAAACTCCATTCTAGTTCTCCCACCAATGACTCTTCAGATGAGGATATGGGTGAAGAATACCTTTCAGCAAAGCTCCATTTGGTAGATCTAGCTGGATCTGAACGAGCTAAAAGAACAGGTTCTGATGGTGTTCGTTTGAAAGAAGGTATACACATCAATAAAGGTCTTCTTGCTCTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTACATGTTCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGGATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAGTTAATCGAGATTTAATCTCCAATGAGATGCAGCAATTGCGCCAGCAGTTGAAGTATTTGCAGGCTGAACTTTGTTCTCGGGTAGGAGCTCCTGCTGATGAAGTGCGGGTTCTCAAGGAAAGGATTGCTTGGCTTGAGTCTACTAATGAGGACCTCTACAGAGAACTTCATAAATATCGCAGTAGATGTGCTTTTGTAGAGAGATGTGAAATTGATGAACCTAATGGACACATTATTCTCATGAAAACCGATGGGCTTGAGAGGCACTTTCAGAGCTTAGATTCATCTGACCATCCCATGGTTGGAAGTATATCAGGTGAGGATTCTAAGGAAACTGATGAAGCAGCTAAAGAGTTGGAGCATGTACTATTGCAAAATACCATGGATAAAGAAATGAATGAATTGAATAAGCGCTTGGAGCAGAAAGAGTCTGAGATGAAGGTCATTGCAGTTGATACTGAAACACTCAAACAACACTTTGGGAAGAAAATTTTGGAACTTGAGGAGGAGAAAAGAAAAGTGCAGGAAGAGAGGGACCGTTTATTGCACGAGGTAGAGAATCTTGCTTCTAATTCAGATGGGCTAGCACACAAAACTCAAGATGTTCGTGGCCAAAAATTGAAGGCATTGGAAGCACAGATTTTAGACCTCAGGAAGAAACAAGAAAGCCATGTGCAGCTATTAAAGCAAAAAGAGAAGAGTGAAGACGCTGCAAAAAGACTGCAGACTGAGATACAATATATCAAGGCTCAGAAGGTTCAGTTGCAGCATAAAATGAAGCAAGAGGCAGAACAATTTCGACAATGGAAGGCTTCTCGTGAGAAGGAGCTACTCCAGTTGAAAAAGGAGGGAAGAAAAAATGAGTACGAAAGACATAAGCTTGAGGCTCTAAACCAACGTCAGAAAATGGTTCTTCAAAGGAAGACAGAGGAAGCAACAATGGCTACGAAAAGGCTAAAAGAATTGTTGGAGGCCCGCAAATCTTCTCCCCGTGATAACTCTGTTTATTCAAATGGACATCTACAGCCTGGGCTGGTCAATGAAAAATCCCTCCAAAGGTGGCTTGATCAGGAGCTGGAGGTCATGGTACATGTGCATGAAGTTCGTGCTGAATATGACAAACAAAATCAAGTCCAAGCTGCACTGGAAGAGGAGTTGGCTTTACTAAAACAGGATCGGTTTTCAGATGGGCAGACTATTCCCAAAGGAAAGAGCAAATATTTGAGGCTGTTATCCATGTCACCAGATGCAAAAGTTGAGAGAATAGCTTCTCTTGAGAACATGTTGTGCATGTCCTCAGTTGCTTTGAAAGCCATGGCTTCACAACTCACTGAGGCAGAAGAAAGGGAACGAACATTAAATAACCGAGGTCGTTGGAACCAGCTACGCTCAATGGGAGATGCAAAGAATGTGCTTCAATATTTGTTCAATGCTACTGCAGAAGCAAGGTGCAAATTGTGGGAAAAGAATATGGAACTTCAGGATTTGAAAGAACAACTAAATGAGCTTGTAGCACTGCTACAACAAAGTGAAGCACAGAGAAAAGAACTTGTAAAGGAGCAAAAAATAAAAGAACAAGCTGTTGCCATCACATTGGATACACCAGCATTGGAAAACTCACGGTCCTTAAAACACCTTGCGGATGAAATGAGTGGTCCGTTATCTCCAATGTCGCTTCCTGCACCAAAGCAACTCAAATTCACTCCTGGAGTTGTTAATTGGTCAGGCAGGGAGTCAGCTACATTTTTAGATGAAGCACGAAAGATGATACCCATTGGAGAGTTGTCAACGAAGAGGCTAGCAGCTATAGGACAAGCCGGAAAACTTTGGAAGTGGAAGAGAAGTCATCATCAATGGCTGCTACAGTTTAAATGGAAGTGGCAGAAGCCCTGGAAACTCTCAGAATGGATCAAACACAGTGATGAGACAATTATGAGGTCAAGGCCTCGAGCACAAGCTTTGATTAATGTGATGTGA
>Glyma17g18540.2 sequence type=predicted peptide gene model=Glyma17g18540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEASEKCSVKVALHIRPLIADERQQGCIECVSVTPSKPQVQIGSHAFTFDYVYGNGGSPSVEMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGYNDNCRSGLIPQVMNALFKKIETLKHQTEFQLRVSFIEILKEEVRDLFDRVSMGKPETSNSNGHSGKITVPGKSPIQIRETSNGVITLAGITEVAVSTLHEMSSYLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMHKLHSSSPTNDSSDEDMGEEYLSAKLHLVDLAGSERAKRTGSDGVRLKEGIHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDLISNEMQQLRQQLKYLQAELCSRVGAPADEVRVLKERIAWLESTNEDLYRELHKYRSRCAFVERCEIDEPNGHIILMKTDGLERHFQSLDSSDHPMVGSISGEDSKETDEAAKELEHVLLQNTMDKEMNELNKRLEQKESEMKVIAVDTETLKQHFGKKILELEEEKRKVQEERDRLLHEVENLASNSDGLAHKTQDVRGQKLKALEAQILDLRKKQESHVQLLKQKEKSEDAAKRLQTEIQYIKAQKVQLQHKMKQEAEQFRQWKASREKELLQLKKEGRKNEYERHKLEALNQRQKMVLQRKTEEATMATKRLKELLEARKSSPRDNSVYSNGHLQPGLVNEKSLQRWLDQELEVMVHVHEVRAEYDKQNQVQAALEEELALLKQDRFSDGQTIPKGKSKYLRLLSMSPDAKVERIASLENMLCMSSVALKAMASQLTEAEERERTLNNRGRWNQLRSMGDAKNVLQYLFNATAEARCKLWEKNMELQDLKEQLNELVALLQQSEAQRKELVKEQKIKEQAVAITLDTPALENSRSLKHLADEMSGPLSPMSLPAPKQLKFTPGVVNWSGRESATFLDEARKMIPIGELSTKRLAAIGQAGKLWKWKRSHHQWLLQFKWKWQKPWKLSEWIKHSDETIMRSRPRAQALINVM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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