Glyma17g18250 - SoyBase

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Report for Sequence Feature Glyma17g18250

Feature Type:	gene_model
Chromosome:	Gm17
Start:	15472351
stop:	15486782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g18250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37270	AT	Annotation by Michelle Graham. TAIR10: heavy metal atpase 1 \| chr4:17541987-17546352 REVERSE LENGTH=819	SoyBase	E_val: 0	ISS
GO:0006754	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006878	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009636	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to toxin	SoyBase	N/A	ISS
GO:0009642	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light intensity	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0055069	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion homeostasis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004008	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper-exporting ATPase activity	SoyBase	N/A	ISS
GO:0005388	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015434	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cadmium-transporting ATPase activity	SoyBase	N/A	ISS
GO:0015633	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc transporting ATPase activity	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG0207	KOG	Cation transport ATPase	JGI		ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF175	Panther		JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_B9SG08	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heavy metal cation transport atpase, putative n=1 Tax=Ricinus communis RepID=B9SG08_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MVS6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MVS6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g18250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g18250

Paralog	Evidence	Comments
Glyma05g21280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g18250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g166800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g18250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g18250

Limit To All Plant Sequences

>Glyma17g18250.2   sequence type=CDS   gene model=Glyma17g18250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAATTCCTTATTCAATCCCCTCCACCAAATTGCACTCATCTCTTCATATTTACACCGGCGTTACACGAATTCGATCCCTCCCTCTTCGCCCTCCCCCAATCTCAATCAAACCTCTATATTCCCCCAATTTCCTCATTCTCCATCGCCACAGACTTCGCTGCGTCGCTGAATCCTCCAATAATCATCATCATCATGACCACGACCATCACCACGGCCACCACCACCACCATCATCATCATCACCACTCCCACGGTGCTAATCTCACCGGGCCTCAAAAAGCTGTCATCGCTTTCGCCAAAGCCACCAGATGGATGGACCTGGCAGACATCCTGAGGGAGCACCTGCATCTTTGCTGCTTCTCCACCGCTCTCTTCGTCGCCGCCGCAATTTGCCCTCACACCTTGCCCAAGCCACTCGTCAAGCCTCTTCAAAACTCCCTCATCTTCGTCGCCTTCCCTCTGGTTGGGGTTTCTGCATCACTTGACGCTCTCATAGAAATCAGCAGCGGAAAGGTGAACATCCATGTTCTGATGGCTATGGCAGCCTTTGCATCGATATTCATGGGAAACTCTTTGGAAGGAGGCCTGCTTCTTGCCATGTTTAACCTCGCGCATATCGCCGAAGAGTATTTCACCAGCCGGTCGATGGTTGATGTTAGGGAGTTGAAAGAAAATAATCCAGATTTCGCCCTTGTTCTGGATACCAATGATGATGATAAACTCCCCAATACGTTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTGACTGTAGGATCATTTATTCTGGTTGGCACCGGCGAGTCTGTGCCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGTGGTTCAAGGAACTTAGATGGGAGGATAATTGTGGAGGTAATGAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAGTTAACTGAAGAAGCACAGTCAAATAAACCTAAACTTGAAAGGTGGCTGGATGAATTTGGTGAACGTTATAGCCAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCATTTTTATTTAAGTGGCCATTCGTTAGTACATCCGCTTGCAGAGGTTCAATTTACAGAGCCTTAGGGCTTATGGTGGCAGCATCCCCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGTTCCTGTGCCAGAAAGGGGATATTACTCAAAGGTGGGCATGTTCTGGATGCTCTTGCTTCTTGTCATACTATTGCATTTGACAAAACAGGGACATTGACCACTGGTGGACTCGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAACGAATCAAATGTTCCTTCGTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTTCAGCAATGGAAAAGGGTACCACTCACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTCGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAAAGCATCACTTGGGTCAATAGATTTCATCACCTCTTTATGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCACGTCCTGGGGTTGTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTACGTGTGATGATGTTAACTGGTGATCATGAGTCTAGTGCAAGGCGAGTTGCAAGTGGTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTCGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCTGCAACTGTTGGGATAGTTCTTGCTCACCGAGCTAGTGCAACTGCCATCGCTGTTGCCGATGTATTGTTGCTTAGAGAAAGCATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTAGCTTTAGCATTGACGTCCATTCTCATGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTCTGTCTCAATTCCGTACGTGCTCTGAATGAACCATCTTGGTCCTGGAAGCATGATATATTCCATTTGATTAGCGAGATTAAATCTAGACTCCTGTCTCTCAAGACAAATATCACGGGCTCAAACAGTATCATAACGACGAATTTGTAA

Predicted protein sequences of Glyma17g18250

Limit To All Plant Sequences

>Glyma17g18250.2   sequence type=predicted peptide   gene model=Glyma17g18250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIPYSIPSTKLHSSLHIYTGVTRIRSLPLRPPPISIKPLYSPNFLILHRHRLRCVAESSNNHHHHDHDHHHGHHHHHHHHHHSHGANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVKPLQNSLIFVAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTNDDDKLPNTFDLAYKRVPVHDVTVGSFILVGTGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGSRNLDGRIIVEVMKTWKESTLSRIVQLTEEAQSNKPKLERWLDEFGERYSQVVVVLSIAIAVIGPFLFKWPFVSTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESNVPSCCIPTCEKEALAVASAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSIDFITSLCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVVNVIQELQDEAKLRVMMLTGDHESSARRVASGVGINEFHCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRESISAVPFCIAKSRQTTSLIKQNVALALTSILMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDIFHLISEIKSRLLSLKTNITGSNSIITTNL*

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