Glyma17g18160 - SoyBase

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Report for Sequence Feature Glyma17g18160

Feature Type:	gene_model
Chromosome:	Gm17
Start:	15380365
stop:	15391928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g18160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34630	AT	Annotation by Michelle Graham. TAIR10: geranyl diphosphate synthase 1 \| chr2:14578689-14581632 FORWARD LENGTH=422	SoyBase	E_val: 0	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0008299	GO-bp	Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0004161	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dimethylallyltranstransferase activity	SoyBase	N/A	ISS
GO:0004659	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity	SoyBase	N/A	ISS
GO:0050347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: trans-octaprenyltranstransferase activity	SoyBase	N/A	ISS
KOG0776	KOG	Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase	JGI		ISS
PTHR12001	Panther	GERANYLGERANYL PYROPHOSPHATE SYNTHASE	JGI		ISS
PTHR12001:SF19	Panther	gb def: putative isopentenyl pyrophosphate isomerase, fps [halobacterium sp. nrc-1]	JGI		ISS
PF00348	PFAM	Polyprenyl synthetase	JGI		ISS
UniRef100_Q9FET8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Geranyl diphosphat synthase n=1 Tax=Quercus robur RepID=Q9FET8_QUERO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF29	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF29 related cluster n=1 Tax=unknown RepID=UPI000233EF29	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g18160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g18160 not represented in the dataset	Glyma17g18160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g18160

Paralog	Evidence	Comments
Glyma05g21570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g18160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g166000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g18160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g18160

Limit To All Plant Sequences

>Glyma17g18160.2   sequence type=transcript   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGGAAACGGTCAAGCAAAATTGCACGTAACTCGCTTGTCAAGCCTAAAAAAATGATTTATTAGTCAACAAGAAAATTGGTAAAAATGAAGATTATTATATGGTCGGGTTTCGGCGTCGTCTCTACATTTTAATTCATAAACGATGGTTGGAGTTTATTTGTTTAATTGTCTCTGCCTCTTTCTTTCTCTTTTGACGGCTCCTAAATAATAATCCCACTTCTCTCCTTCGCCGCCTCAAAGTCTTTCGTGGAATACGATGCTGTTTTCTCGGATATCGAAAAACCTCAGAGGCAGCTTCAACTCTTGTCGGTGGTTTCGGTCCATCGGAGACCACAACCACTGCTTTCTTTCCCCGCACAATTTTCATTCACGCGGTGGAGACTCTACTCAACAGGTTATGAGAAGTTTAATTTTTTCAAAGGGCCCAGCACTGCATAGTAGTAGATATCTGATCCATCATCAAAGCAGCTCCATAGTTGAGGATGAACATGATCCATTTTCACTGGTTGCAGATGAACTGTCACTTCTTGGCAACAAGTTGCGAGCAATGGTAGTTGCTGAGGTTCCAAAGCTTGCCTCGGCTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGCCCTACAGTTTTATTGTTAATGTCAACTGCACTAAATCTACCAATACATGAAGCACCTCCTCCTATCGAGATAGGAGGTACTTTGACAACTGATGTACGTTTAAGACAACAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTCGCCTCTTTGAAAAATACAGAGGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATCAAATAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCAGAAGTTGCAATGCTTGCTTTTGAGGTTTGGCATTTCAATTGATAGATGATGTTCTTGATTTCACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCAGACATTCGTCATGGAATTGTTACTGCTCCAATATTGTTTGCTATGGAGGAGTTCCCTCAGTTGCGTGCAATTGTTGATGAGGGCTTCGAAAACCCTGCAAATGTTGATCTTGCTCTGGAGTATCTAGGAAAAAGCCGAGGTATACAGAGGACACGGGAGCTAGCTGTGGAGCATGCTAACCTTGCAGCAGCAGCAATCGATTCCTTACCGGAGAACGACGATGAAGATGTAAGAAAATCAAGGAAAGCCCTGATAGATCTAACTCACAGAGTCATTACACGAACAAAGTAAAAGGAAGACTCTCCCCTCCCTTATTTTGTTTTTGTGGGTAGCTAAAGGGGAAAAGATCTTGGTAAAAATCAATACTCAAAATTGTTTTGTTGCCATCAATTTTTCTGTAATGGTCCCCCTAAGCCCGAAAGTGTGGGGGAAAATAAGCTGTTTCTAGGATTAATGTCGTCATTCGTTTTTCTTATTTATTTAAATTAATTTCTTTCCCTCTGTTTGTGCTCCATTGTTATAATATTAACTTTGGGCAAGTTTGGCCAGTTTGCCCCTCCTTGTTTTGTTACTACTTTATCTTTCTGCTGCTTGCATTTGGAGCATTGAACAACTGTAGAGTGTTTTATTCATAAATTTATTAAAATCATCTTGTAAAATGTATGGTTATAATCAATTAATCCCGTGAAAGTAAAAGAATTT

>Glyma17g18160.3   sequence type=transcript   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGGAAACGGTCAAGCAAAATTGCACGTAACTCGCTTGTCAAGCCTAAAAAAATGATTTATTAGTCAACAAGAAAATTGGTAAAAATGAAGATTATTATATGGTCGGGTTTCGGCGTCGTCTCTACATTTTAATTCATAAACGATGGTTGGAGTTTATTTGTTTAATTGTCTCTGCCTCTTTCTTTCTCTTTTGACGGCTCCTAAATAATAATCCCACTTCTCTCCTTCGCCGCCTCAAAGTCTTTCGTGGAATACGATGCTGTTTTCTCGGATATCGAAAAACCTCAGAGGCAGCTTCAACTCTTGTCGGTGGTTTCGGTCCATCGGAGACCACAACCACTGCTTTCTTTCCCCGCACAATTTTCATTCACGCGGTGGAGACTCTACTCAACAGGTTATGAGAAGTTTAATTTTTTCAAAGGGCCCAGCACTGCATAGTAGTAGATATCTGATCCATCATCAAAGCAGCTCCATAGTTGAGATGAACTGTCACTTCTTGGCAACAAGTTGCGAGCAATGGTAGTTGCTGAGGTTCCAAAGCTTGCCTCGGCTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGCCCTACAGTTTTATTGTTAATGTCAACTGCACTAAATCTACCAATACATGAAGCACCTCCTCCTATCGAGATAGGAGGTACTTTGACAACTGATGTACGTTTAAGACAACAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTCGCCTCTTTGAAAAATACAGAGGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATCAAATAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCAGAAGTTGCAATGCTTGCTTTTGAGTATGGAAAAAATCTGGGTTTGGCATTTCAATTGATAGATGATGTTCTTGATTTCACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCAGACATTCGTCATGGAATTGTTACTGCTCCAATATTGTTTGCTATGGAGGAGTTCCCTCAGTTGCGTGCAATTGTTGATGAGGGCTTCGAAAACCCTGCAAATGTTGATCTTGCTCTGGAGTATCTAGGAAAAAGCCGAGGTATACAGAGGACACGGGAGCTAGCTGTGGAGCATGCTAACCTTGCAGCAGCAGCAATCGATTCCTTACCGGAGAACGACGATGAAGATGTAAGAAAATCAAGGAAAGCCCTGATAGATCTAACTCACAGAGTCATTACACGAACAAAGTAAAAGGAAGACTCTCCCCTCCCTTATTTTGTTTTTGTGGGTAGCTAAAGGGGAAAAGATCTTGGTAAAAATCAATACTCAAAATTGTTTTGTTGCCATCAATTTTTCTGTAATGGTCCCCCTAAGCCCGAAAGTGTGGGGGAAAATAAGCTGTTTCTAGGATTAATGTCGTCATTCGTTTTTCTTATTTATTTAAATTAATTTCTTTCCCTCTGTTTGTGCTCCATTGTTATAATATTAACTTTGGGCAAGTTTGGCCAGTTTGCCCCTCCTTGTTTTGTTACTACTTTATCTTTCTGCTGCTTGCATTTGGAGCATTGAACAACTGTAGAGTGTTTTATTCATAAATTTATTAAAATCATCTTGTAAAATGTATGGTTATAATCAATTAATCCCGTGAAAGTAAAAGAATTT

Coding sequences of Glyma17g18160

Limit To All Plant Sequences

>Glyma17g18160.1   sequence type=CDS   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTTTCTCGGATATCGAAAAACCTCAGAGGCAGCTTCAACTCTTGTCGGTGGTTTCGGTCCATCGGAGACCACAACCACTGCTTTCTTTCCCCGCACAATTTTCATTCACGCGGTGGAGACTCTACTCAACAGGTTATGAGAAGTTTAATTTTTTCAAAGGGCCCAGCACTGCATAGTAGTAGATATCTGATCCATCATCAAAGCAGCTCCATAGTTGAGGATGAACATGATCCATTTTCACTGGTTGCAGATGAACTGTCACTTCTTGGCAACAAGTTGCGAGCAATGGTAGTTGCTGAGGTTCCAAAGCTTGCCTCGGCTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGCCCTACAGTTTTATTGTTAATGTCAACTGCACTAAATCTACCAATACATGAAGCACCTCCTCCTATCGAGATAGGAGGTACTTTGACAACTGATGTACGTTTAAGACAACAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTCGCCTCTTTGAAAAATACAGAGGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATCAAATAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCAGAAGTTGCAATGCTTGCTTTTGAGTATGGAAAAAATCTGGGTTTGGCATTTCAATTGATAGATGATGTTCTTGATTTCACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCAGACATTCGTCATGGAATTGTTACTGCTCCAATATTGTTTGCTATGGAGGAGTTCCCTCAGTTGCGTGCAATTGTTGATGAGGGCTTCGAAAACCCTGCAAATGTTGATCTTGCTCTGGAGTATCTAGGAAAAAGCCGAGGTATACAGAGGACACGGGAGCTAGCTGTGGAGCATGCTAACCTTGCAGCAGCAGCAATCGATTCCTTACCGGAGAACGACGATGAAGATGTAAGAAAATCAAGGAAAGCCCTGATAGATCTAACTCACAGAGTCATTACACGAACAAAGTAA

>Glyma17g18160.2   sequence type=CDS   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTTTCTCGGATATCGAAAAACCTCAGAGGCAGCTTCAACTCTTGTCGGTGGTTTCGGTCCATCGGAGACCACAACCACTGCTTTCTTTCCCCGCACAATTTTCATTCACGCGGTGGAGACTCTACTCAACAGGTTATGAGAAGTTTAATTTTTTCAAAGGGCCCAGCACTGCATAGTAGTAGATATCTGATCCATCATCAAAGCAGCTCCATAGTTGAGGATGAACATGATCCATTTTCACTGGTTGCAGATGAACTGTCACTTCTTGGCAACAAGTTGCGAGCAATGGTAGTTGCTGAGGTTCCAAAGCTTGCCTCGGCTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGCCCTACAGTTTTATTGTTAATGTCAACTGCACTAAATCTACCAATACATGAAGCACCTCCTCCTATCGAGATAGGAGGTACTTTGACAACTGATGTACGTTTAAGACAACAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTCGCCTCTTTGAAAAATACAGAGGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATCAAATAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCAGAAGTTGCAATGCTTGCTTTTGAGGTTTGGCATTTCAATTGA

>Glyma17g18160.3   sequence type=CDS   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGTTGCTGAGGTTCCAAAGCTTGCCTCGGCTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTTCGCCCTACAGTTTTATTGTTAATGTCAACTGCACTAAATCTACCAATACATGAAGCACCTCCTCCTATCGAGATAGGAGGTACTTTGACAACTGATGTACGTTTAAGACAACAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTGGCAGTGTTGGCTGGAGATTTTTTGCTTTCTCGGGCTTGTGTTGCTCTCGCCTCTTTGAAAAATACAGAGGTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATCAAATAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCAGAAGTTGCAATGCTTGCTTTTGAGTATGGAAAAAATCTGGGTTTGGCATTTCAATTGATAGATGATGTTCTTGATTTCACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCAGACATTCGTCATGGAATTGTTACTGCTCCAATATTGTTTGCTATGGAGGAGTTCCCTCAGTTGCGTGCAATTGTTGATGAGGGCTTCGAAAACCCTGCAAATGTTGATCTTGCTCTGGAGTATCTAGGAAAAAGCCGAGGTATACAGAGGACACGGGAGCTAGCTGTGGAGCATGCTAACCTTGCAGCAGCAGCAATCGATTCCTTACCGGAGAACGACGATGAAGATGTAAGAAAATCAAGGAAAGCCCTGATAGATCTAACTCACAGAGTCATTACACGAACAAAGTAA

Predicted protein sequences of Glyma17g18160

Limit To All Plant Sequences

>Glyma17g18160.1   sequence type=predicted peptide   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFSRISKNLRGSFNSCRWFRSIGDHNHCFLSPHNFHSRGGDSTQQVMRSLIFSKGPALHSSRYLIHHQSSSIVEDEHDPFSLVADELSLLGNKLRAMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMSTALNLPIHEAPPPIEIGGTLTTDVRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMTTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTAEVAMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVDEGFENPANVDLALEYLGKSRGIQRTRELAVEHANLAAAAIDSLPENDDEDVRKSRKALIDLTHRVITRTK*

>Glyma17g18160.2   sequence type=predicted peptide   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFSRISKNLRGSFNSCRWFRSIGDHNHCFLSPHNFHSRGGDSTQQVMRSLIFSKGPALHSSRYLIHHQSSSIVEDEHDPFSLVADELSLLGNKLRAMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMSTALNLPIHEAPPPIEIGGTLTTDVRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMTTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTAEVAMLAFEVWHFN*

>Glyma17g18160.3   sequence type=predicted peptide   gene model=Glyma17g18160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMSTALNLPIHEAPPPIEIGGTLTTDVRLRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMTTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQTAEVAMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVDEGFENPANVDLALEYLGKSRGIQRTRELAVEHANLAAAAIDSLPENDDEDVRKSRKALIDLTHRVITRTK*

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