Glyma17g18140 - SoyBase

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Report for Sequence Feature Glyma17g18140

Feature Type:	gene_model
Chromosome:	Gm17
Start:	15358859
stop:	15372798
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g18140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67320	AT	Annotation by Michelle Graham. TAIR10: WD-40 repeat family protein \| chr5:26857268-26860974 FORWARD LENGTH=613	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
KOG0273	KOG	Beta-transducin family (WD-40 repeat) protein	JGI		ISS
PTHR22846	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22846:SF2	Panther	TRANSDUCIN BETA-LIKE 1	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF08513	PFAM	LisH	JGI		ISS
UniRef100_B9SG25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylation factor subunit, putative n=1 Tax=Ricinus communis RepID=B9SG25_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MVR6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MVR6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g18140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g18140

Paralog	Evidence	Comments
Glyma05g21580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g18140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g165900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g18140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g18140

Limit To All Plant Sequences

>Glyma17g18140.2   sequence type=transcript   gene model=Glyma17g18140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGTGTAATATAATATATACGGTATGTTAAAGGATAAACGGGAAAGTAGAAGAAATGGAAGCGGTGTAAAAGTAACAGAGGCGGATAGAACCGAAAAACCCAACCCGACCCCGTGAGCGTGCGTGACTGTGGCAGTTTCTAATCCGTTCTCTCTCTCTCTCTGCTACCTCTTACCTAGCTCGCTACCTCACGTAATCGTTCACCGTTCACCTTTTTCTTCTCCAATCGCAACCAAACTTCTCTCTCTCCCTCTCTCCCTCTCTCTCTCTCATGTTCTTGTAGCGGAACCGTTCTTGCTTCTCGGAGAACATGGCCTCCATCTCCTCCGCCGAACTCAATTACCTCGTTTATCGCTACCTTCAAGAATCAGGTTTCACGCATGCTGCTTTTACTTTTGGTTATGAAGCTGGTATTAACAAATGCTCCATTGATGGAAATTTGGTGCCGTCAGGTGCTCTTGTTACATTTATTCAGAAGGGTCTACAGTACTTTGAGATGGAAGCCAACTTGAGTAATCCTGCCAGTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAACTTAGGCAAATGATAAGTGAAAGAAGAAAAAAACTACAAAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGGCGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGATAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAAGGAGAAAGAAGTTGAAAAGGAAAGACGTGAAAGACAGAAAGAAGTTGTGAAGGATAGGGAGAAGGTAGAAAATGATAAAGAACGAGAACAACAACACGGAGACCAGACTGTCAGAAAAATGGTCATAGATCATGAAGATAGGGTTCCTGTTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAATCAATGGACATCTCTACTACATCAACATCTCAGCTATTTGAAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCAGGATCTGGAGATTCGACAGCTCGTATTTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCACAGAACAGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTCACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATATATGTTTGCAAAATTGGAGAAACCCGCCCTATAAAAACTTTTGCTGGGCACCAGGGTGAGGTTAATTGTGTCAAATGGGATCCCTCAGGTTCATTGCTAGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATGTACAGCTTGGATGGACACAGGCATCCCGTATATTCTGTTGCTTTCAGTCCCAACGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAATATCTGTGTAGCACCAATTTCTCCACACTAGTACATTAAATTCTTTCTTTTCACCCCTTGAGATGAGATCGGTGGAAGTGTATTTTGGGTGGGTGGTAGGTTACCCATTTTAACCATAGTTGTAGGTATAACTCATTGTTCGTGGATCCCGTTGTAATTTGCTATAACATTAGTAAAAAGTAGTTTGTAGGAGTGCATTCTTAATAAGCCGAAGTGTATAGATTTAGTTAGATAATATCCTGTACAATTATCGCTTGACTTGTGTTTTTTGTATCTACTTGCCTTTCTCTTGCTCCGATGGCTGCAAATGGCCTGCAATTTCGGCCCCGTTGATCCATTAGGGCTTGATAATGAAGGGAATGGGTGAGGT

Coding sequences of Glyma17g18140

Limit To All Plant Sequences

>Glyma17g18140.1   sequence type=CDS   gene model=Glyma17g18140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCATCTCCTCCGCCGAACTCAATTACCTCGTTTATCGCTACCTTCAAGAATCAGGTTTCACGCATGCTGCTTTTACTTTTGGTTATGAAGCTGGTATTAACAAATGCTCCATTGATGGAAATTTGGTGCCGTCAGGTGCTCTTGTTACATTTATTCAGAAGGGTCTACAGTACTTTGAGATGGAAGCCAACTTGAGTAATTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAACTTAGGCAAATGATAAGTGAAAGAAGAAAAAAACTACAAAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGGCGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGATAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAAGGAGAAAGAAGTTGAAAAGGAAAGACGTGAAAGACAGAAAGAAGTTGTGAAGGATAGGGAGAAGGTAGAAAATGATAAAGAACGAGAACAACAACACGGAGACCAGACTGTCAGAAAAATGGTCATAGATCATGAAGATAGGGTTCCTGTTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAATCAATGGACATCTCTACTACATCAACATCTCAGCTATTTGAAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCAGGATCTGGAGATTCGACAGCTCGTATTTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCACAGAACAGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTCACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATATATGTTTGCAAAATTGGAGAAACCCGCCCTATAAAAACTTTTGCTGGGCACCAGGGTGAGGTTAATTGTGTCAAATGGGATCCCTCAGGTTCATTGCTAGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATGTACAGCTTGGATGGACACAGGCATCCCGTATATTCTGTTGCTTTCAGTCCCAACGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAA

>Glyma17g18140.2   sequence type=CDS   gene model=Glyma17g18140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAGTGAAAGAAGAAAAAAACTACAAAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGGCGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGATAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGAGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAAGGAGAAAGAAGTTGAAAAGGAAAGACGTGAAAGACAGAAAGAAGTTGTGAAGGATAGGGAGAAGGTAGAAAATGATAAAGAACGAGAACAACAACACGGAGACCAGACTGTCAGAAAAATGGTCATAGATCATGAAGATAGGGTTCCTGTTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAATCAATGGACATCTCTACTACATCAACATCTCAGCTATTTGAAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCAGGATCTGGAGATTCGACAGCTCGTATTTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCACAGAACAGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTCACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATATATGTTTGCAAAATTGGAGAAACCCGCCCTATAAAAACTTTTGCTGGGCACCAGGGTGAGGTTAATTGTGTCAAATGGGATCCCTCAGGTTCATTGCTAGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATGTACAGCTTGGATGGACACAGGCATCCCGTATATTCTGTTGCTTTCAGTCCCAACGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAA

Predicted protein sequences of Glyma17g18140

Limit To All Plant Sequences

>Glyma17g18140.1   sequence type=predicted peptide   gene model=Glyma17g18140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFIQKGLQYFEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGERVRVREKDRREREKEVEKDRRERDKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEVEKERRERQKEVVKDREKVENDKEREQQHGDQTVRKMVIDHEDRVPVVKLEENGAVGGPESMDISTTSTSQLFEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGSQNSPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPSGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLMYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM*

>Glyma17g18140.2   sequence type=predicted peptide   gene model=Glyma17g18140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISERRKKLQKERKKEFEKEHEGERVRVREKDRREREKEVEKDRRERDKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEVEKERRERQKEVVKDREKVENDKEREQQHGDQTVRKMVIDHEDRVPVVKLEENGAVGGPESMDISTTSTSQLFEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGSQNSPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPSGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLMYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM*

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