SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37390 | AT | Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein | chr4:17579722-17581768 FORWARD LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0010252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin homeostasis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0010279 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: indole-3-acetic acid amido synthetase activity | SoyBase | N/A | ISS |
| PF03321 | PFAM | GH3 auxin-responsive promoter | JGI | ISS | |
| UniRef100_I1MVR1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVR1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q05680 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive GH3 product n=1 Tax=Glycine max RepID=Q05680_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma17g18040 not represented in the dataset |
Glyma17g18040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g21680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g18040.1 sequence type=CDS gene model=Glyma17g18040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATTGCTAATTGTGATGATAAAAACGCAAAAACTTTGCAGTTCATTGAAGATATGACACGAAACACTGATAGTGTCCAAGAGAGGGTCCTTGCTGAGATTCTGAGCCAAAACGCCCAAACCGAATACCTGAAACGGTTTGAGCTGAATGGAGCCACAGACCGTGACACTTTCAAGTCCAAGGTACCTGTCGTTTCATACGATGATTTGAAGCATGATATCCAACGCATTGCTAACGGTGACCGCTCTCCTATCCTATGCGCTCACCCAATCACCGAGTTTCTCACCAGTTCTGGAACATCTGCTGGGGAGAGAAAATTGATGCCAACAATTAGTCAAGAGACGGAACGCCGTCAATTAATTTTCAGCCTTCCCATGCCAGTGATGAATCAATACGTGGCTGATTTGGACAAGGGTAAGGCTCTCCTCTTCCTGTTCACCAAAGCCGAGACGAAAACTCCAAGTGGCTTAGTGGCACGTCCAGTGTCTGCTAGCATGTACAAGAGTGAACAGTTCAAAAACAGACCCTATGATCCATACAACGTGTACACTAGCCCCAACGAAGCAATCCTCTGTCTTGATTCCTTCCAAAGCATGTACACCCAAGTGCTATGCGGCCTCATCATGCGCCATCAAGTCCTCAGAATCGGAGCCAATTTCGCTTCGGGCCTTCTCCGAGCCATTCGCTTCCTCCAGCTCAATTGGGCTGAACTAGCCCACGACATCTCCACCGGAACCCTAAACCCCAAAATCTCCGACCTCCCCATCAAACAACGCATGACCCAAATCCTCAAACCCGACCCGGAACTCGCTGATTTCATTGTGAAAGAATGCTCGGGAGAAAACTGGGAAAGCATAATCCCCAGAATCTGGCCAAACACCAAGTTCGTAGAGGTGATTGTGACCGGTGCCATGGCGCAGTATATTCCAACTCTTGATTATTACAGCGGAGGCCTACCTATCGCTTCCAACATATACGGATCCTCCGAGTGCTTCTTCGGGATTAACCTAAACCCATTTTGCAACCCCTCTGATGTGTCCTACACCATCATGCCAAACATGGGTTACTTCGAGTTCTTGCCCCATGATCACGATGATGACGACGGTGCTTTGTATTCAGGTTCCGATTCCAGTTCGCGATTAACCGACCTGGCTGATGTTGAACTCGGAAAATCATACGAAATTGTTGTCACCACGTACTCCGGTATATGCCGTTACCGTGTGGGCGACATTCTCCGAGTCACCGGGTTCCACAACTCCACCCCGCAGTTCAGCTTCGTGAGGAGAAAAAACGTATTGTTGAGCATCGACTCCGACAAAACGGACGAAGCGGAGTTACAAAACGCCGTCGAGAACGCCTCCGTGCTGTTGAAGGAGTTCAAGACGAGCGTGGTGGAGTACACGAGCTTTGCGGACACGAAGTCGATCCCGGGGCACTACGTGATTTACTGGGAACTCTTGATGAAGGACTCGTCCAACGCTCCAACGAGTGAAGCGTTGGAGCAGTGTTGTTTGAGAATGGAAGAGTCGCTGAATGCGGTGTATCGACAATGCAGGGTCGCGGAGCATTCAATTGGGCCGTTGGAGATTCGTGTGGTGAAGAACGGAACTTTTGAGGAGCTTATGGACTACGCTATCTCACGCGGCGCGTCGATTAGCCAGTACAAGGTGCCGCGCTGCGTGAGCTTCACGCCCATAACGGAGTTGCTTGACTCTAGGGTTGAGTCCGTTCATTTTAGCCCCGCTGAACCGCACTGGACCCCGGAACGACGTCGTTGA
>Glyma17g18040.1 sequence type=predicted peptide gene model=Glyma17g18040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIANCDDKNAKTLQFIEDMTRNTDSVQERVLAEILSQNAQTEYLKRFELNGATDRDTFKSKVPVVSYDDLKHDIQRIANGDRSPILCAHPITEFLTSSGTSAGERKLMPTISQETERRQLIFSLPMPVMNQYVADLDKGKALLFLFTKAETKTPSGLVARPVSASMYKSEQFKNRPYDPYNVYTSPNEAILCLDSFQSMYTQVLCGLIMRHQVLRIGANFASGLLRAIRFLQLNWAELAHDISTGTLNPKISDLPIKQRMTQILKPDPELADFIVKECSGENWESIIPRIWPNTKFVEVIVTGAMAQYIPTLDYYSGGLPIASNIYGSSECFFGINLNPFCNPSDVSYTIMPNMGYFEFLPHDHDDDDGALYSGSDSSSRLTDLADVELGKSYEIVVTTYSGICRYRVGDILRVTGFHNSTPQFSFVRRKNVLLSIDSDKTDEAELQNAVENASVLLKEFKTSVVEYTSFADTKSIPGHYVIYWELLMKDSSNAPTSEALEQCCLRMEESLNAVYRQCRVAEHSIGPLEIRVVKNGTFEELMDYAISRGASISQYKVPRCVSFTPITELLDSRVESVHFSPAEPHWTPERRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
