Glyma17g18000 - SoyBase

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Report for Sequence Feature Glyma17g18000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	15112844
stop:	15116582
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g18000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48385	AT	Annotation by Michelle Graham. TAIR10: FRIGIDA-like protein \| chr5:19609471-19611712 FORWARD LENGTH=558	SoyBase	E_val: 5.00E-106	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07899	PFAM	Frigida-like protein	JGI		ISS
UniRef100_B9SG32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein FRIGIDA, putative n=1 Tax=Ricinus communis RepID=B9SG32_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DF7D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DF7D related cluster n=1 Tax=unknown RepID=UPI000233DF7D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g18000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g18000

Paralog	Evidence	Comments
Glyma05g21790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g18000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g165100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g18000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g18000

Limit To All Plant Sequences

>Glyma17g18000.2   sequence type=CDS   gene model=Glyma17g18000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCGAGGATCAAGACGAGAAAATTAATGTACAGTCTGTGATAGAGCAGCTCTCTCAGGCATTTCTTGAATTGAAAGCTCAGAAGGGGGAGACTGAGAATAAGATTCAGTGGGTTGAAATTAAGCAACATTTCCATGACCTTGAGACAGAATTGAATAAGAAACTTGAAGAGCTGGAAGCTAAGGAGAGGCAGTACGAAGCAAAACAATTAGAAGTGGATACACTACTTGCAGAAAGGAAGGCTGTGGTTGCTTCAAAAGAGCAAGACCTCTTAGATCGGTTGCAGGAGCTTAAAGATGCTGCTGTAGCTTCCATTGTAGAGGCTCATGCAAATCACTGGAATGCCACTCTGGAGTCTGTGTATGATGGGAAGAACAAAGATCACAAGGTAAGCAGCTCTCTTGGCGATACAAATTCCTCAGAGGACGATTTTCCTCATAAGTCAGGCGAAAAGTCTAAAGGTGTGGCTGTTGAGGGCAGGCCACATCCAGAACTGACACAATTTTGTGAGCAAATGGATGCAAAAGGTCTTCTGAATTATATTATGGAGAATAAAAAAAAACTGTCTGTTAATTGTGAAGAAATTTCTGTAGCATTACAAAGTGCAACTAATCCAGCACGTTTGGTGCTGGATTTACTGGAGGGGTTTTACCCCACCAGTGAAACTTCCCAACTAAAAGATAAATCTGGTGCTGCCCTACAGGGCATGCGCAAATCCTGTATTATAATTTTGGAAGCCATGGCCACCTTATTGGCAAGGGCTGATCCAGGTGCAGATCACCTTCTGAACCCTCAAACCAAGCAGCAAGCCAAAGCAATTGCTGATGAGTGGAGGCCCAAGTTAGCTAGAGCAGATACTGATGCTGCCAATGGAAATTCATTGGAAGCAAAGGCATTCTTTCAGCTTATTTCAACTTTTAGGATTGCTTCAGAGTTTGATGAAGAAGAACTCTGCAAGCTTGTACTTGCAGTTGCTCAGCTTAGGCAGGCACCTGAGCTCTGCCGCTCTATTGGGTTAATTCACAAAATGCCAGTTGTTGTAGAATCATTAATCAATAATGGGAAACAAATAGCAGCTGTACATTTTATTCATGCCTTCCAGCTTCAAGAAAGCTTCCCCCCTGTGCCCCTTCTGAAGGCATACCTCAAGAATCGAAGGAGAAACTCACAAGTTAAGACTGGAAATGTGCGTGACATTGCTAGTGCAAAGAATGATGCCAATGCGCAAGAGCTTTCCGCACTGAGAGCTGTAATTAAGTGTATTGAAGAATACAAGCTTGAATCTGAGTACCCTCCTGATACACTTCGGAAAAGGGTTCTTCAACTAGAGAAATCAAAAGGAGATCGAAAGAGAAGTGGAGGAGAATTTATTAAACGCCCTCAATCAAAGAGGCCAAGGCCGAATGAGAGACACTTTTCACTCCATTCATCTGGTAGTGCTGCTTCAGCTGTTATTTTGGGTAGGCAGGTTCCCCCTGTTAGGGCGCCATATGCAGCAAATCCTGATCGGTATCCCCATGCTGGCGCAATCCCATACAATTATCAAGTTCCTGGCCAATCTGTATACACTGCACCATCTAATGCTCCTCCTTCTAACTATGGTCGTTATATGGGTACTAGTACTAGTTTGCAATCCTCACACCAGCCATACATGTGA

Predicted protein sequences of Glyma17g18000

Limit To All Plant Sequences

>Glyma17g18000.2   sequence type=predicted peptide   gene model=Glyma17g18000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEDQDEKINVQSVIEQLSQAFLELKAQKGETENKIQWVEIKQHFHDLETELNKKLEELEAKERQYEAKQLEVDTLLAERKAVVASKEQDLLDRLQELKDAAVASIVEAHANHWNATLESVYDGKNKDHKVSSSLGDTNSSEDDFPHKSGEKSKGVAVEGRPHPELTQFCEQMDAKGLLNYIMENKKKLSVNCEEISVALQSATNPARLVLDLLEGFYPTSETSQLKDKSGAALQGMRKSCIIILEAMATLLARADPGADHLLNPQTKQQAKAIADEWRPKLARADTDAANGNSLEAKAFFQLISTFRIASEFDEEELCKLVLAVAQLRQAPELCRSIGLIHKMPVVVESLINNGKQIAAVHFIHAFQLQESFPPVPLLKAYLKNRRRNSQVKTGNVRDIASAKNDANAQELSALRAVIKCIEEYKLESEYPPDTLRKRVLQLEKSKGDRKRSGGEFIKRPQSKRPRPNERHFSLHSSGSAASAVILGRQVPPVRAPYAANPDRYPHAGAIPYNYQVPGQSVYTAPSNAPPSNYGRYMGTSTSLQSSHQPYM*

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