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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43100 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1339 | KOG | Aspartyl protease | JGI | ISS | |
| PTHR13683 | Panther | ASPARTYL PROTEASES | JGI | ISS | |
| PTHR13683:SF98 | Panther | CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED | JGI | ISS | |
| PF00026 | PFAM | Eukaryotic aspartyl protease | JGI | ISS | |
| UniRef100_G7JCS6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1 n=1 Tax=Medicago truncatula RepID=G7JCS6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MVQ7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MVQ7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g17990 not represented in the dataset |
Glyma17g17990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g21800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g165000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g17990.2 sequence type=transcript gene model=Glyma17g17990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCATCACCCTACTTTTACACAGAACGCTGAATTCATTTCCCTCCTTTCTCCAATTAACAGACTCTCCACCATCCTTTCCTTTTTCTCTCTTTCTTTTGATCCGTTATCGCAGGAAGGAACAACCATAACTCGGATCCCGACTCGTTCTTCGAGCCCGAGTCACCAACTCATGGCGCGGGCACTCACGCACCACCTATCACTAATCCTAATCCTCATCGTCGCCGTCGCCGGCGACGCCAATCTCCTCCGAAACCGCCACCACGGCTCTCGCCCTGCCATGCTCCTTCCCCTGTACCTCTCCGCACCGAATTCCTCCACGTCAGCGCTCGATCCCCGTCGCCAGCTCACCGGATCCGAGTCTAAACGCCACCCTAACGCGCGCATGAGGCTCCACGACGATCTCCTCCTCAACGGGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGCGAACAATGTGGCAGGCACCAGGATCCAAAGTTTCAGCCGGAATCTTCAAGCACCTATCAACCTGTCAAATGTACAATTGATTGCAACTGTGACAGTGACAGGATGCAGTGTGTGTATGAGAGACAATATGCTGAAATGAGTACAAGCAGTGGTGTTCTTGGTGAGGATCTCATATCCTTTGGAAATCAGAGTGAGCTTGCTCCGCAGCGTGCTGTTTTTGGCTGTGAAAATGTTGAGACTGGTGATCTTTATAGTCAGCATGCCGATGGCATCATGGGTTTGGGCCGCGGTGATCTTAGTATCATGGATCAACTTGTTGACAAAAATGTAATTAGTGATTCATTCTCACTATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGTCCATATTACAATATTGATTTGAAGGAGATACACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGATAGTGGTACAACTTATGCTTACCTACCAGAAGCAGCATTTCTTGCATTTAAAGATGCTATTGTGAAGGAACTTCAATCTCTCAAGAAAATCAGTGGTCCAGATCCAAATTATAATGATATATGTTTTTCTGGTGCTGGAATTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGAAAATGGTCAGAAGTACACACTGTCACCTGAAAACTACATGTTTCGGCATTCAAAAGTGCGAGGTGCATACTGTCTGGGAGTTTTTCAAAATGGAAATGACCAAACTACTCTGTTAGGAGGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGATATCTGTTGCCCCACCACCATTACCTCCAAATTCTGGAGTAAGAAATTCAAGTGAAGCATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTTATGTGGATATGAAGCCTCACATTAAAGAATTGGCTGGACTCTTTGCTCATGGGTTAAATGTTAATACTTCCCAGGTTAGAAAGTTATTACTACATTGCATGAATAATTGTTGCATAATTATATATTAAAGTTCAAATAACAATTTTAATCAAGTTAAAAAATGTTTGATAAAAATATACGTAAATAGCATGGCTAGCTCGGGTGATTAGCATAGGTTTGGGATTTTGGTAGCGGCTCTAAGTTTAAGGCTCTAATAATTTGTGGTGATAATTTACTCTGCTAGTTTGTTTTTTGTTACTCTATGATGGATGTTTGCAGGTTCACTTACTGAATTTTACGTCTACTGGAAATGATTCGCTCAGTAAATGGGCCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTGGAAATTATAAGTTGATTGATTGGAGTGTCGAGCCTCCATCAAAGAATTGGTGGCAGCAACACTTCTTGGTCGTGAGTTTAGCTATTTTGATCACATTGCTTCTAGGATTGTCGATATTAGGAACGTTCTTAATTTGGAAAAAAAGACAGCAAAGCTCGCATTCATACAAGCCAGTGGATGTGGTTGTTCCAGAGCAAGAACTTCAGCCATTATGAGCTAAGGTCATGCTACTGCTTCTTTAATATCTTACTTGATAGTGTCAGTAGCATATTCAACTATTATCAAGAGAGCAATTTATGCAAACCATAGTCACTCAACTGATCAAGTTTTTTGTTTCAAAGAAATCAGGCTGTCACGATATCCAGTGATCATTGAACCCTGATAGAGGTACATAAAGATTTCTCTAGATATGTTATCTATCATCTGTAAGCGCAATTTTGTTTGTGAAATGTGAATATTGTAATATACAGGTGAATCAAAGGGTGGCAGCATTAGATTGAAATACAATTTCATATATTGTAATTTTTACATTTCATTTCAGTTGTGGCTTATTACCGCGTTATGTTCTTATTCTGTTTCGACGACTCTTTACAATAGGGAATAATGTCTGAGGAATTAATCAATCTACTTCGTTCCTTATTTTCCTCACAAGTTTCAAGTGAGAATAATGCTACATTGCCACTCATCTGCAAAGTGTATAGTTGGAGAATAAAACAGAATCGGCTATTTCAAGATAATCATCATTTCATTGTCTTGTACATATGTTGTAGATCTCTGTTTGTGACTGTCTGTCT
>Glyma17g17990.1 sequence type=CDS gene model=Glyma17g17990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCGGGCACTCACGCACCACCTATCACTAATCCTAATCCTCATCGTCGCCGTCGCCGGCGACGCCAATCTCCTCCGAAACCGCCACCACGGCTCTCGCCCTGCCATGCTCCTTCCCCTGTACCTCTCCGCACCGAATTCCTCCACGTCAGCGCTCGATCCCCGTCGCCAGCTCACCGGATCCGAGTCTAAACGCCACCCTAACGCGCGCATGAGGCTCCACGACGATCTCCTCCTCAACGGGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGCGAACAATGTGGCAGGCACCAGGATCCAAAGTTTCAGCCGGAATCTTCAAGCACCTATCAACCTGTCAAATGTACAATTGATTGCAACTGTGACAGTGACAGGATGCAGTGTGTGTATGAGAGACAATATGCTGAAATGAGTACAAGCAGTGGTGTTCTTGGTGAGGATCTCATATCCTTTGGAAATCAGAGTGAGCTTGCTCCGCAGCGTGCTGTTTTTGGCTGTGAAAATGTTGAGACTGGTGATCTTTATAGTCAGCATGCCGATGGCATCATGGGTTTGGGCCGCGGTGATCTTAGTATCATGGATCAACTTGTTGACAAAAATGTAATTAGTGATTCATTCTCACTATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGTCCATATTACAATATTGATTTGAAGGAGATACACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGATAGTGGTACAACTTATGCTTACCTACCAGAAGCAGCATTTCTTGCATTTAAAGATGCTATTGTGAAGGAACTTCAATCTCTCAAGAAAATCAGTGGTCCAGATCCAAATTATAATGATATATGTTTTTCTGGTGCTGGAATTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGAAAATGGTCAGAAGTACACACTGTCACCTGAAAACTACATGTTTCGGCATTCAAAAGTGCGAGGTGCATACTGTCTGGGAGTTTTTCAAAATGGAAATGACCAAACTACTCTGTTAGGAGGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGATATCTGTTGCCCCACCACCATTACCTCCAAATTCTGGAGTAAGAAATTCAAGTGAAGCATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTTATGTGGATATGAAGCCTCACATTAAAGAATTGGCTGGACTCTTTGCTCATGGGTTAAATGTTAATACTTCCCAGGTTCACTTACTGAATTTTACGTCTACTGGAAATGATTCGCTCAGTAAATGGGCCATAACCCCAAAACCAGATTCTCATTACATTTCTAACACTACTGCAATGAATATAATTGCCCGGCTTGCTGAACATCGCATCCAACTTCCTGGCACCTTTGGAAATTATAAGTTGATTGATTGGAGTGTCGAGCCTCCATCAAAGAATTGGTGGCAGCAACACTTCTTGGTCGTGAGTTTAGCTATTTTGATCACATTGCTTCTAGGATTGTCGATATTAGGAACGTTCTTAATTTGGAAAAAAAGACAGCAAAGCTCGCATTCATACAAGCCAGTGGATGTGGTTGTTCCAGAGCAAGAACTTCAGCCATTATGA >Glyma17g17990.2 sequence type=CDS gene model=Glyma17g17990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCGGGCACTCACGCACCACCTATCACTAATCCTAATCCTCATCGTCGCCGTCGCCGGCGACGCCAATCTCCTCCGAAACCGCCACCACGGCTCTCGCCCTGCCATGCTCCTTCCCCTGTACCTCTCCGCACCGAATTCCTCCACGTCAGCGCTCGATCCCCGTCGCCAGCTCACCGGATCCGAGTCTAAACGCCACCCTAACGCGCGCATGAGGCTCCACGACGATCTCCTCCTCAACGGGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGCGAACAATGTGGCAGGCACCAGGATCCAAAGTTTCAGCCGGAATCTTCAAGCACCTATCAACCTGTCAAATGTACAATTGATTGCAACTGTGACAGTGACAGGATGCAGTGTGTGTATGAGAGACAATATGCTGAAATGAGTACAAGCAGTGGTGTTCTTGGTGAGGATCTCATATCCTTTGGAAATCAGAGTGAGCTTGCTCCGCAGCGTGCTGTTTTTGGCTGTGAAAATGTTGAGACTGGTGATCTTTATAGTCAGCATGCCGATGGCATCATGGGTTTGGGCCGCGGTGATCTTAGTATCATGGATCAACTTGTTGACAAAAATGTAATTAGTGATTCATTCTCACTATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGTCCATATTACAATATTGATTTGAAGGAGATACACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGATAGTGGTACAACTTATGCTTACCTACCAGAAGCAGCATTTCTTGCATTTAAAGATGCTATTGTGAAGGAACTTCAATCTCTCAAGAAAATCAGTGGTCCAGATCCAAATTATAATGATATATGTTTTTCTGGTGCTGGAATTGATGTCTCTCAACTCTCTAAAAGTTTTCCAGTGGTTGACATGGTATTTGAAAATGGTCAGAAGTACACACTGTCACCTGAAAACTACATGTTTCGGCATTCAAAAGTGCGAGGTGCATACTGTCTGGGAGTTTTTCAAAATGGAAATGACCAAACTACTCTGTTAGGAGGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGATATCTGTTGCCCCACCACCATTACCTCCAAATTCTGGAGTAAGAAATTCAAGTGAAGCATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTTATGTGGATATGAAGCCTCACATTAAAGAATTGGCTGGACTCTTTGCTCATGGGTTAAATGTTAATACTTCCCAGGTTAGAAAGTTATTACTACATTGCATGAATAATTGTTGCATAATTATATATTAA
>Glyma17g17990.1 sequence type=predicted peptide gene model=Glyma17g17990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARALTHHLSLILILIVAVAGDANLLRNRHHGSRPAMLLPLYLSAPNSSTSALDPRRQLTGSESKRHPNARMRLHDDLLLNGYYTTRLWIGTPPQMFALIVDTGSTVTYVPCSTCEQCGRHQDPKFQPESSSTYQPVKCTIDCNCDSDRMQCVYERQYAEMSTSSGVLGEDLISFGNQSELAPQRAVFGCENVETGDLYSQHADGIMGLGRGDLSIMDQLVDKNVISDSFSLCYGGMDVGGGAMVLGGISPPSDMAFAYSDPVRSPYYNIDLKEIHVAGKRLPLNANVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIVKELQSLKKISGPDPNYNDICFSGAGIDVSQLSKSFPVVDMVFENGQKYTLSPENYMFRHSKVRGAYCLGVFQNGNDQTTLLGGIIVRNTLVVYDREQTKIGFWKTNCAELWERLQISVAPPPLPPNSGVRNSSEALEPSVAPSVSQHNARPGELKIVQITMVISFNISYVDMKPHIKELAGLFAHGLNVNTSQVHLLNFTSTGNDSLSKWAITPKPDSHYISNTTAMNIIARLAEHRIQLPGTFGNYKLIDWSVEPPSKNWWQQHFLVVSLAILITLLLGLSILGTFLIWKKRQQSSHSYKPVDVVVPEQELQPL* >Glyma17g17990.2 sequence type=predicted peptide gene model=Glyma17g17990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARALTHHLSLILILIVAVAGDANLLRNRHHGSRPAMLLPLYLSAPNSSTSALDPRRQLTGSESKRHPNARMRLHDDLLLNGYYTTRLWIGTPPQMFALIVDTGSTVTYVPCSTCEQCGRHQDPKFQPESSSTYQPVKCTIDCNCDSDRMQCVYERQYAEMSTSSGVLGEDLISFGNQSELAPQRAVFGCENVETGDLYSQHADGIMGLGRGDLSIMDQLVDKNVISDSFSLCYGGMDVGGGAMVLGGISPPSDMAFAYSDPVRSPYYNIDLKEIHVAGKRLPLNANVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIVKELQSLKKISGPDPNYNDICFSGAGIDVSQLSKSFPVVDMVFENGQKYTLSPENYMFRHSKVRGAYCLGVFQNGNDQTTLLGGIIVRNTLVVYDREQTKIGFWKTNCAELWERLQISVAPPPLPPNSGVRNSSEALEPSVAPSVSQHNARPGELKIVQITMVISFNISYVDMKPHIKELAGLFAHGLNVNTSQVRKLLLHCMNNCCIIIY*
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