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Report for Sequence Feature Glyma17g17980

Feature Type:gene_model
Chromosome:Gm17
Start:15099667
stop:15102322
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g17980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59650AT Annotation by Michelle Graham. TAIR10: mitochondrial ribosomal protein L51/S25/CI-B8 family protein | chr3:22033216-22033928 FORWARD LENGTH=119 SoyBaseE_val: 9.00E-74ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3445 KOG Mitochondrial/chloroplast ribosomal protein 36a JGI ISS
PTHR21396Panther 39S RIBOSOMAL PROTEIN L43 JGI ISS
PF05047PFAM Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain JGI ISS
UniRef100_G7L937UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ribosomal protein L43 n=1 Tax=Medicago truncatula RepID=G7L937_MEDTR SoyBaseE_val: 5.00E-73ISS
UniRef100_I1MVQ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVQ6_SOYBN SoyBaseE_val: 2.00E-83ISS

Expression Patterns of Glyma17g17980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g17980 not represented in the dataset
Glyma17g17980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g17980
ParalogEvidenceComments
Glyma05g21810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g17980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g164900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g17980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g17980
>Glyma17g17980.1   sequence type=CDS   gene model=Glyma17g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGCGAGGGGTTTGGCAACTTAACAAGCTGATTGTCAGTTATTGCAACTGGGGCGGAAGTAGCAGAGGTATAAGGGCATTTATGGAGTCTCATTTGCCAACGTTTAAGGAGAAGAATCCTCAATTAGAGGTGGTAACTGAACTCATTCGTGGTCAGCATCCACATCTGAAGGCTTATTACAAGAACAAGAATCAGCGAGTGATATGTGTGAAGAATATGGACCCAGAAGACATACTTTTGCATGCAACCAGGCTAAGAAATGCATTGGGAAGGAAGGTAGTGAAATTGAGGACAAGACATGTAACCAAACACCCTAGTGTGCAAGGTACTTGGACAACTGCTGTGGAGTATTAA
Predicted protein sequences of Glyma17g17980
>Glyma17g17980.1   sequence type=predicted peptide   gene model=Glyma17g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRGVWQLNKLIVSYCNWGGSSRGIRAFMESHLPTFKEKNPQLEVVTELIRGQHPHLKAYYKNKNQRVICVKNMDPEDILLHATRLRNALGRKVVKLRTRHVTKHPSVQGTWTTAVEY*






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