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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37470 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270 | SoyBase | E_val: 2.00E-152 | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009704 | GO-bp | Annotation by Michelle Graham. GO Biological Process: de-etiolation | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG4178 | KOG | Soluble epoxide hydrolase | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF13 | Panther | BIPHENYL HYDROLASE-RELATED | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_B9SG47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sigma factor sigb regulation protein rsbq, putative n=1 Tax=Ricinus communis RepID=B9SG47_RICCO | SoyBase | E_val: 1.00E-158 | ISS |
| UniRef100_I1MVQ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVQ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g17890 not represented in the dataset |
Glyma17g17890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g164400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g17890.1 sequence type=CDS gene model=Glyma17g17890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTATCGTGGAAGAGGCTCACAACGTGAGAATAGTAGGGAAGGGGAATGAAATCGTGATTCTTGCTCATGGGTTCGGCACGGACCAATCGGTGTGGAAGCACCTTGTACCGCATCTGGTCGATGATTACCAAGTGATCTTGTACGACAACATGGGTGCTGGTACCACGAACCCAGACTACTTCGACTTCGAACGTTACTACACGATCGATGGTTTTGTCTATGACCTACTCGCCATCTTGCAAGAGCTTCAGGTGCAATCTTGTATCTTCGTTGGCCACTCTCTTTCTGCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACTAAACTCATCCTTGTCTCTGCCTCTCCAAGGTTTCTGAATGATTCAGAATACTTTGGAGGGTTCCAGCAAGAAGATCTGACCCAACTCTACGATGGAATCCGGTCGAATTACAAAGCATGGTGTTCGGGGTTCGCTCCGCTGGTGATCGGCGGCGACATGGACTCGGTGGCGGTGCAGGAGTTCAGCCGAACGCTCTTCAACATGCGGCCAGACATAGCCTTGAGTTTGGCGCAGACCATATTCCAGTTCGACATGAGGCCAATCCTATGCCACGTCACGGTGCCGTGCCACATCATTCAGAGCACCAAGGACCTGGCTGCGCCGGTTGTGGTGGCGGAGTATCTGCAGCAGAATTTGGGAGGGAAGACCATCGTGGAGGTCATGCCCACCGAGGGCCACTTGCCGCAGCTGAGCTCGCCGGATATTGTGGTTCCGGTTTTGCTCAACCACATCCGACACAATTTGGCAGAGGACAAATAA
>Glyma17g17890.1 sequence type=predicted peptide gene model=Glyma17g17890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIVEEAHNVRIVGKGNEIVILAHGFGTDQSVWKHLVPHLVDDYQVILYDNMGAGTTNPDYFDFERYYTIDGFVYDLLAILQELQVQSCIFVGHSLSAMVGLLASISHPHLFTKLILVSASPRFLNDSEYFGGFQQEDLTQLYDGIRSNYKAWCSGFAPLVIGGDMDSVAVQEFSRTLFNMRPDIALSLAQTIFQFDMRPILCHVTVPCHIIQSTKDLAAPVVVAEYLQQNLGGKTIVEVMPTEGHLPQLSSPDIVVPVLLNHIRHNLAEDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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