SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23070 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:9824162-9826871 REVERSE LENGTH=432 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0668 | KOG | Casein kinase II, alpha subunit | JGI | ISS | |
| PTHR24054 | Panther | CASEIN KINASE II SUBUNIT ALPHA | JGI | ISS | |
| PTHR24054:SF37 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_B9SGY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase II, alpha chain, putative n=1 Tax=Ricinus communis RepID=B9SGY9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MVM6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVM6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma17g17520 not represented in the dataset |
Glyma17g17520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g22320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g161800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g17520.2 sequence type=transcript gene model=Glyma17g17520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTTTTTTCCCAGCTGCAACTTTTACTTGCAATTTAATGGCCCTAAGGCCCTTCTTCTATTTCAACTTCTCGCGCGATAGATTGCTCTTTTCTCCTTCGCTCTTCCCTTTCCCATTCCCATTCCTATTCCTCCTTTCCCTCTCCTCTCCGCTCCTCCAATTCCCCCCAAACTTTCTCCCTCCGCCGCTTCGCCGCCGCCTCTCTCGCTTGCCCTCCACCGCCGCCGCCGCCCCTCGACGCCATGGCCCAGAAAATCGGAAAGTCCACGCGCCGCCCCGGTGCCTCCTCCAAGGCCCGCGTCTATGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATGTTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCACATAATGTAATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCATCAAGATATTTCAAAGGTCCCGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTTGGCTGTTCCTGAGGCCGTTGACTTTGTTGACAAGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAGCACATTGAGTTGTTGGTGCTTGTTGAGATATGGTGTTCGTTCTTGACAGGGGGGCAACAGTCTGAACTGTTATTTCTGGTGGAACTTGCTTTTAGGTGATTCCCCTGTTCTGTTGTAAAACTCATTTTAATTAGCTTTTTGCATAATAGTTTTGTTTCTGGTTTTTTAAAATTATTTTTGGGTGGAAATTCAGCTCTCTACAGTTTTATTTGATTGTGTGCCAAAATTTGGAAATGAAATGTTGATTCAATTTCAGAAAAATTATCCGCGTGTTTTTTTATGTAACATGTTGAATCATATTTTTAAGGTTCCCGAT
>Glyma17g17520.1 sequence type=CDS gene model=Glyma17g17520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCAGAAAATCGGAAAGTCCACGCGCCGCCCCGGTGCCTCCTCCAAGGCCCGCGTCTATGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATGTTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCACATAATGTAATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCATCAAGATATTTCAAAGGTCCCGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTTGGCTGTTCCTGAGGCCGTTGACTTTGTTGACAAGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAGCACATTGA >Glyma17g17520.2 sequence type=CDS gene model=Glyma17g17520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCAGAAAATCGGAAAGTCCACGCGCCGCCCCGGTGCCTCCTCCAAGGCCCGCGTCTATGCCGATGTCAACGTCGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATGTTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCACATAATGTAATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCATCAAGATATTTCAAAGGTCCCGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAGGCATAGCCGCAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCATCACTTGGCTGTTCCTGAGGCCGTTGACTTTGTTGACAAGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAGCACATTGA
>Glyma17g17520.1 sequence type=predicted peptide gene model=Glyma17g17520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCVIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIFELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSVYLDKYRIELDPHLAALIGRHSRKPWAKFINVENHHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRAH* >Glyma17g17520.2 sequence type=predicted peptide gene model=Glyma17g17520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCVIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIFELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSVYLDKYRIELDPHLAALIGRHSRKPWAKFINVENHHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRAH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
