Glyma17g17310 - SoyBase

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Report for Sequence Feature Glyma17g17310

Feature Type:	gene_model
Chromosome:	Gm17
Start:	14111314
stop:	14115193
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g17310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67620	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:26964891-26965720 REVERSE LENGTH=182	SoyBase	E_val: 1.00E-54	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TG56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG56_SOYBN	SoyBase	E_val: 6.00E-129	ISS
UniRef100_Q10QE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10QE1_ORYSJ	SoyBase	E_val: 1.00E-34	ISS

Expression Patterns of Glyma17g17310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g17310

Paralog	Evidence	Comments
Glyma05g22660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g17310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g160100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g17310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g17310

Limit To All Plant Sequences

>Glyma17g17310.2   sequence type=transcript   gene model=Glyma17g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGTTGGATCGATCAGAGTTTTAAAATTATAGTATTATCCATGAATTTTCCGTCAAATGTCTTGAGAAAATTCAACATTTTTTATTTTGAATTAAAACATATAAGCAGTTGAATTTGTCAGTGAGTCAGAAAGACACATGGATCACAATTCAGAACTGAAGGCAAGTAGGGGGAAAGTAGTACCTACTACCGAACCCATTAGCAGAACTGGAGTTTTCCAATTATAAAAGAGTGCATACACGGCAAAGTTACGTTCAATTTCAATTCAACTCCCAGCCCCAAGGTGTGTTTGTTTTGCAGATCCAACACGCCTCAACCACACTCTCTCTATTTATATCCAACTGTCCCATCCTCACTCGCAACCCTTTTCCCCTTTTATCAATTCAAACCACGCCTTCCCCTGTTCACAACCTAGCTTGCCCACACCACCATCACAACACAAACCATTCCTCTCTTGCATTTAAACAAAAATAAATATAGATTCTGGGGGCATTTCTTGGATTCTGGTTCTCGTTGGTCACATCCATCAAACACCCCTTTGATTCTTTCTTGGCGTGCGTCAGGTTCAATTCATTTTTATGGCAACCCTGTCAGAGTAATAAGACAGTTACCGTGTTGTACGTGTCCTTCAAACGTCACCCACTTCAACACATAAACCAACGTTTCTCTCTTCCCAGTTCCCAGCAGATTTATTATTTATTCATCATACTAAACCCACCGCACCCACAATACTACCATTGCAATTGTTTGTTACATTCTCTGGGTCAGTTTGGTAATACTAATTTATATGGGGAATTGCCAAGCTGCGGAAGCGGCTACGGTTGTGATTCAGCATCCTGGGAACAAGATCGAGAGGGTTTATTGGTCGCTAAGCGCACACGAGGTTATGAACTCGAATCCTGGTCACTATGTTGCGCTTGTCGTGTCCTCGCCCACGCTTATGGCCGAGAATGGCACGCCGATGAAGCAGCTTAAGCTTCTCCGACCAGACGATACTTTGCATATTGGCCAGGTTTATCGCTTGATCAGCTTCGAAGATGTGTTGAAGGAGTTTGCTTCCAAGAAATGTGGTAAACTTGGGAAATTGCTCAAGGAGACGGGTAGTCATGGGATTCAGATGAAGCACAAGGACTCTAGAGCTCTAAATCCTAGCCGGAATTCCAAATCTGAATTCGGTTCCATTAAGGTAATTAATTTTTATGTTAATGCTGCCTACCTCTCTGTTTGAATTATTTAAGCCTCCTATCGCGCAATTAATTAAATTGGTTTGAAAAATTATTAAACTAATATGTCTGTGTGTTTGGTGATGAATATGAGTATACCATGCTGCGTTTTAATTGTGATAGTATGGTCGAAGGATAGCATTATTTTTTTTCTTTTATATCATATCCTTCGCTTTAAGGCAGAGTCTAATTGGAATATAGCGGTGTGGCATTTTTTTTTTCTTCTTTTCTCTGTATTAGACATGAATAAAGGTTTTGCATGTGCAAATTCATAGATGATCGTATCTTCTGTACTACAGTAGAATTTTATCATTATTTCATTAAGGACGGATCTCAAGGGTGTTTCTTCTTTTTTTAGAAGAGTTTGGTTATAAATTTTCCTCACTTTTAGTTGGGACAGAGACACTGGTGAGTGCATGTAATAA

Coding sequences of Glyma17g17310

Limit To All Plant Sequences

>Glyma17g17310.1   sequence type=CDS   gene model=Glyma17g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGCCAAGCTGCGGAAGCGGCTACGGTTGTGATTCAGCATCCTGGGAACAAGATCGAGAGGGTTTATTGGTCGCTAAGCGCACACGAGGTTATGAACTCGAATCCTGGTCACTATGTTGCGCTTGTCGTGTCCTCGCCCACGCTTATGGCCGAGAATGGCACGCCGATGAAGCAGCTTAAGCTTCTCCGACCAGACGATACTTTGCATATTGGCCAGGTTTATCGCTTGATCAGCTTCGAAGATGTGTTGAAGGAGTTTGCTTCCAAGAAATGTGGTAAACTTGGGAAATTGCTCAAGGAGACGGGTAGTCATGGGATTCAGATGAAGCACAAGGACTCTAGAGCTCTAAATCCTAGCCGGAATTCCAAATCTGAATTCGGTTCCATTAAGGTCGAACAGGAGATTCAACGAATGGGGAACAATGGCAGGAGCAACAACAACAATAAAAAAGGTGTTGGAAGGCCTTTCGTTGGTAGTGGTGGTCAATGGAGGCCAGCCTTGCAGAGCATTGCAGAAATTGGAACTTGA

>Glyma17g17310.2   sequence type=CDS   gene model=Glyma17g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGCCAAGCTGCGGAAGCGGCTACGGTTGTGATTCAGCATCCTGGGAACAAGATCGAGAGGGTTTATTGGTCGCTAAGCGCACACGAGGTTATGAACTCGAATCCTGGTCACTATGTTGCGCTTGTCGTGTCCTCGCCCACGCTTATGGCCGAGAATGGCACGCCGATGAAGCAGCTTAAGCTTCTCCGACCAGACGATACTTTGCATATTGGCCAGGTTTATCGCTTGATCAGCTTCGAAGATGTGTTGAAGGAGTTTGCTTCCAAGAAATGTGGTAAACTTGGGAAATTGCTCAAGGAGACGGGTAGTCATGGGATTCAGATGAAGCACAAGGACTCTAGAGCTCTAAATCCTAGCCGGAATTCCAAATCTGAATTCGGTTCCATTAAGGTAATTAATTTTTATGTTAATGCTGCCTACCTCTCTGTTTGA

Predicted protein sequences of Glyma17g17310

Limit To All Plant Sequences

>Glyma17g17310.1   sequence type=predicted peptide   gene model=Glyma17g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLMAENGTPMKQLKLLRPDDTLHIGQVYRLISFEDVLKEFASKKCGKLGKLLKETGSHGIQMKHKDSRALNPSRNSKSEFGSIKVEQEIQRMGNNGRSNNNNKKGVGRPFVGSGGQWRPALQSIAEIGT*

>Glyma17g17310.2   sequence type=predicted peptide   gene model=Glyma17g17310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLMAENGTPMKQLKLLRPDDTLHIGQVYRLISFEDVLKEFASKKCGKLGKLLKETGSHGIQMKHKDSRALNPSRNSKSEFGSIKVINFYVNAAYLSV*

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