Glyma17g17210 - SoyBase

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Report for Sequence Feature Glyma17g17210

Feature Type:	gene_model
Chromosome:	Gm17
Start:	14043859
stop:	14044850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g17210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_D7MA12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MA12_ARALL	SoyBase	E_val: 9.00E-07	ISS
UniRef100_I1MVJ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVJ7_SOYBN	SoyBase	E_val: 7.00E-138	ISS

Expression Patterns of Glyma17g17210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g17210

Paralog	Evidence	Comments
Glyma05g22760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g17210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g159600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g17210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g17210

Limit To All Plant Sequences

>Glyma17g17210.1   sequence type=CDS   gene model=Glyma17g17210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCTATTCTGGTTCTTATTCCTCATCATCCAACTCTTCATACTTGACCCAAAACAACCGTGAGGACTCAAAAGGGTATCACATGAAACAACAAATTTACCCTCTTCAAAATCACAGTTCTTCGTGGCTCCGTTCCGTGAGAAAGACACCAGCAAAGCCGTGGAAGAAGCACCATGTGGCACCGATGCCACCAACACCAGTGAAAGTGTACAAAGTGGATGCTATAAACTTTCGTGAAGTTGTTCAGCAACTCACAGGTGCACCCAAGCACAAGCCTCAGCAGCTTCTCCAAATCAACATCGCACGTGCTGAATCTTCTGATGCTCCCCTTGATGTGCCACCAAAGCAAAACCAATCAAGTGGAGACACGTGCAATAAATGGTACCAGGAGTTTCTCTTGGGAATGAATTCTCCGGGGACTAATAATAATAATAATGATGGAGCAATGACACCGGGTTTTCTAGGAATGAATTTGCTCTCACCAAATTCTTATAGTAATTATTTCTGTTTCTTTCCTCCTTTGAGCCCAAGTGGTGTCACAAGTTTGGAACCGGGGAAGGTTCTCTAG

Predicted protein sequences of Glyma17g17210

Limit To All Plant Sequences

>Glyma17g17210.1   sequence type=predicted peptide   gene model=Glyma17g17210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAYSGSYSSSSNSSYLTQNNREDSKGYHMKQQIYPLQNHSSSWLRSVRKTPAKPWKKHHVAPMPPTPVKVYKVDAINFREVVQQLTGAPKHKPQQLLQINIARAESSDAPLDVPPKQNQSSGDTCNKWYQEFLLGMNSPGTNNNNNDGAMTPGFLGMNLLSPNSYSNYFCFFPPLSPSGVTSLEPGKVL*

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