Glyma17g17000 - SoyBase

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Report for Sequence Feature Glyma17g17000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13835157
stop:	13840714
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g17000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49720	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BL	SoyBase	E_val: 2.00E-121	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TMN5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TMN5_SOYBN	SoyBase	E_val: 9.00E-163	ISS
UniRef100_Q9FH88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB66910.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FH88_ARATH	SoyBase	E_val: 6.00E-85	ISS

Expression Patterns of Glyma17g17000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g17000

Paralog	Evidence	Comments
Glyma05g23000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g17000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g158200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g17000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g17000

Limit To All Plant Sequences

>Glyma17g17000.3   sequence type=transcript   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGCGTTGTAGTAGAATAGAATGAGAATTGAGAGTAGTGCGGTTTGCCGGTGAGATCTGTTGTTTAAGTTAGTGCTGTAATGTCATGCTATTGCTATCTCATAGATTTAGATCTAAAATCTCCCTTCTTCATTGCTGAACGCGGTTAAGGCTATGTTATGAATGCGTTCTAATTAAGACACAATAATGACAAGGAAACAAGCAAGTTCCACGAGACGTGGCGGTCTTTCAGGAGTCTTGCATTCCAAATCCAAATCTTCTCCTCTACTCTCCATATCCCTTGTCCTATTTGTAGCCATCCTTCTCATCCTTTATGCTTGTATCGGGTCAGGTATATTGGGAGGAAGAAAGGATGTGATTAGCATGGCTGAAGATGATTTTTCATGCACTTTTGAAGTTCCAAGTGCAATTCCTGTTTTGAAGAATGCATATGGTGGCAGCATGAAAAATGTTTTGCACGTAGGCCCTGAGAGTTGTTCGGTGGTCTCCAAATTTTTAAGAGAAGGGGAAACTGAAGCATGGGGTGTGGAGCCATATGACTTAGACGATGCTGATAGGAACTGCAAGGCTCTTGTGCAGAAAGGCATTATACGTGTTGCAGATATAAAATTCCCTTTACCATACAGGGTGAAGTCTTTTTCTCATGTTATAGTGTCAGATGCTTTGGATTACCTGTCTCCAAAATATATAAACAAAACTCTTCCTGAGCTAGCAAGGGTATCTTCTGATGGTATTATTATTTTCACAGGTTACCCAGGTCAACCGAGAGCTAAAATAGCACCATTATCCAAATTTGGCCGTCCACTTGGGACTAGTCAAAGGATTAGTGCATAGCCAGTTCACGTGAATGTGGGGATGTAGATGGTGGTGGAATGTTAGGATCCAATTGTAAGGCTAAAATGCGGAGTTCATCTTGGTGGAAACAATTATTCACTGAAACAAGCTTAGAAGAAAATGAAGCTGCTGTCAAGAAGTTTGAGCAAACTGCGTCGAAGATGTCCTACAAGCCAACTTGCCAAATTTTCCACCTCAATTCATACCATTGATAATTTGATATCTTGGAATTAGATTAATTGATTATTCACCATATCCAGAATTTTGTATTTTTTTGTATTCCTATATAAACATGTGAGTATAAATGTCATCAATCCGGCAATTCTGTTTTACCAGACATGGACAAGCATTAAGATATGTTTGCTTACTAAAAGAATACACAAAATCCAGTAAACACACACACACAAAATTAGAAGTAATTTAGCTGAATATTCTTGGGTGGCTTAGAGGTGTATTTAACATTTTCTCAGACTATAAAATATTGAAATCTTTATTATTTGGTG

>Glyma17g17000.4   sequence type=transcript   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGCGTTGTAGTAGAATAGAATGAGAATTGAGAGTAGTGCGGTTTGCCGGTGAGATCTGTTGTTTAAGTTAGTGCTGTAATGTCATGCTATTGCTATCTCATAGATTTAGATCTAAAATCTCCCTTCTTCATTGCTGAACGCGGTTAAGGCTATGTTATGAATGCGTTCTAATTAAGACACAATAATGACAAGGAAACAAGCAAGTTCCACGAGACGTGGCGGTCTTTCAGGAGTCTTGCATTCCAAATCCAAATCTTCTCCTCTACTCTCCATATCCCTTGTCCTATTTGTAGCCATCCTTCTCATCCTTTATGCTTGTATCGGGTCAGGTATATTGGGAGGAAGAAAGGATGTGATTAGCATGGCTGAAGATGATTTTTCATGCACTTTTGAAGTTCCAAGTGCAATTCCTGTTTTGAAGAATGCATATGGTGGCAGCATGAAAAATGTTTTGCACGTAGGCCCTGAGAGTTGTTCGGTGGTCTCCAAATTTTTAAGAGAAGGGGAAACTGAAGCATGGGGTGTGGAGCCATATGACTTAGACGATGCTGATAGGAACTGCAAGGCTCTTGTGCAGAAAGGCATTATACGTGTTGCAGATATAAAATTCCCTTTACCATACAGGGTGAAGTCTTTTTCTCATGTTATAGTGTCAGATGCTTTGGATTACCTGTCTCCAAAATATATAAACAAAACTCTTCCTGAGCTAGCAAGGGTATCTTCTGATGGTATTATTATTTTCACAGGTTACCCAGGTCAACCGAGAGCTAAAATAGCACCATTATCCAAATTTGGCCGTCCACATAGGTGCTGATGTTGGCATTTCAATGTTAGCTTGGGACTAGTCAAAGGATTAGTGCATAGCCAGTTCACGTGAATGTGGGGATGTAGATGGTGGTGGAATGTTAGGATCCAATTGTAAGGCTAAAATGCGGAGTTCATCTTGGTGGAAACAATTATTCACTGAAACAAGCTTAGAAGAAAATGAAGCTGCTGTCAAGAAGTTTGAGCAAACTGCGTCGAAGATGTCCTACAAGCCAACTTGCCAAATTTTCCACCTCAATTCATACCATTGATAATTTGATATCTTGGAATTAGATTAATTGATTATTCACCATATCCAGAATTTTGTATTTTTTTGTATTCCTATATAAACATGTGAGTATAAATGTCATCAATCCGGCAATTCTGTTTTACCAGACATGGACAAGCATTAAGATATGTTTGCTTACTAAAAGAATACACAAAATCCAGTAAACACACACACACAAAATTAGAAGTAATTTAGCTGAATATTCTTGGGTGGCTTAGAGGTGTATTTAACATTTTCTCAGACTATAAAATATTGAAATCTTTATTATTTGGTG

Coding sequences of Glyma17g17000

Limit To All Plant Sequences

>Glyma17g17000.2   sequence type=CDS   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGGAAACAAGCAAGTTCCACGAGACGTGGCGGTCTTTCAGGAGTCTTGCATTCCAAATCCAAATCTTCTCCTCTACTCTCCATATCCCTTGTCCTATTTGTAGCCATCCTTCTCATCCTTTATGCTTGTATCGGGTCAGGTATATTGGGAGGAAGAAAGGATGTGATTAGCATGGCTGAAGATGATTTTTCATGCACTTTTGAAGTTCCAAGTGCAATTCCTGTTTTGAAGAATGCATATGGTGGCAGCATGAAAAATGTTTTGCACGTAGGCCCTGAGAGTTGTTCGGTGGTCTCCAAATTTTTAAGAGAAGGGGAAACTGAAGCATGGGGTGTGGAGCCATATGACTTAGACGATGCTGATAGGAACTGCAAGGCTCTTGTGCAGAAAGGCATTATACGTGTTGCAGATATAAAATTCCCTTTACCATACAGGGTGAAGTCTTTTTCTCATGTTATAGTGTCAGATGCTTTGGATTACCTGTCTCCAAAATATATAAACAAAACTCTTCCTGAGCTAGCAAGGGTATCTTCTGATGGTATTATTATTTTCACAGGTTACCCAGGTCAACCGAGAGCTAAAATAGCACCATTATCCAAATTTGGCCGTCCAGCTAAAATGCGGAGTTCATCTTGGTGGAAACAATTATTCACTGAAACAAGCTTAGAAGAAAATGAAGCTGCTGTCAAGAAGTTTGAGCAAACTGCGTCGAAGATGTCCTACAAGCCAACTTGCCAAATTTTCCACCTCAATTCATACCATTGA

>Glyma17g17000.3   sequence type=CDS   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGGAAACAAGCAAGTTCCACGAGACGTGGCGGTCTTTCAGGAGTCTTGCATTCCAAATCCAAATCTTCTCCTCTACTCTCCATATCCCTTGTCCTATTTGTAGCCATCCTTCTCATCCTTTATGCTTGTATCGGGTCAGGTATATTGGGAGGAAGAAAGGATGTGATTAGCATGGCTGAAGATGATTTTTCATGCACTTTTGAAGTTCCAAGTGCAATTCCTGTTTTGAAGAATGCATATGGTGGCAGCATGAAAAATGTTTTGCACGTAGGCCCTGAGAGTTGTTCGGTGGTCTCCAAATTTTTAAGAGAAGGGGAAACTGAAGCATGGGGTGTGGAGCCATATGACTTAGACGATGCTGATAGGAACTGCAAGGCTCTTGTGCAGAAAGGCATTATACGTGTTGCAGATATAAAATTCCCTTTACCATACAGGGTGAAGTCTTTTTCTCATGTTATAGTGTCAGATGCTTTGGATTACCTGTCTCCAAAATATATAAACAAAACTCTTCCTGAGCTAGCAAGGGTATCTTCTGATGGTATTATTATTTTCACAGGTTACCCAGGTCAACCGAGAGCTAAAATAGCACCATTATCCAAATTTGGCCGTCCACTTGGGACTAGTCAAAGGATTAGTGCATAG

>Glyma17g17000.4   sequence type=CDS   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGGAAACAAGCAAGTTCCACGAGACGTGGCGGTCTTTCAGGAGTCTTGCATTCCAAATCCAAATCTTCTCCTCTACTCTCCATATCCCTTGTCCTATTTGTAGCCATCCTTCTCATCCTTTATGCTTGTATCGGGTCAGGTATATTGGGAGGAAGAAAGGATGTGATTAGCATGGCTGAAGATGATTTTTCATGCACTTTTGAAGTTCCAAGTGCAATTCCTGTTTTGAAGAATGCATATGGTGGCAGCATGAAAAATGTTTTGCACGTAGGCCCTGAGAGTTGTTCGGTGGTCTCCAAATTTTTAAGAGAAGGGGAAACTGAAGCATGGGGTGTGGAGCCATATGACTTAGACGATGCTGATAGGAACTGCAAGGCTCTTGTGCAGAAAGGCATTATACGTGTTGCAGATATAAAATTCCCTTTACCATACAGGGTGAAGTCTTTTTCTCATGTTATAGTGTCAGATGCTTTGGATTACCTGTCTCCAAAATATATAAACAAAACTCTTCCTGAGCTAGCAAGGGTATCTTCTGATGGTATTATTATTTTCACAGGTTACCCAGGTCAACCGAGAGCTAAAATAGCACCATTATCCAAATTTGGCCGTCCACATAGGTGCTGA

Predicted protein sequences of Glyma17g17000

Limit To All Plant Sequences

>Glyma17g17000.2   sequence type=predicted peptide   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRKQASSTRRGGLSGVLHSKSKSSPLLSISLVLFVAILLILYACIGSGILGGRKDVISMAEDDFSCTFEVPSAIPVLKNAYGGSMKNVLHVGPESCSVVSKFLREGETEAWGVEPYDLDDADRNCKALVQKGIIRVADIKFPLPYRVKSFSHVIVSDALDYLSPKYINKTLPELARVSSDGIIIFTGYPGQPRAKIAPLSKFGRPAKMRSSSWWKQLFTETSLEENEAAVKKFEQTASKMSYKPTCQIFHLNSYH*

>Glyma17g17000.3   sequence type=predicted peptide   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRKQASSTRRGGLSGVLHSKSKSSPLLSISLVLFVAILLILYACIGSGILGGRKDVISMAEDDFSCTFEVPSAIPVLKNAYGGSMKNVLHVGPESCSVVSKFLREGETEAWGVEPYDLDDADRNCKALVQKGIIRVADIKFPLPYRVKSFSHVIVSDALDYLSPKYINKTLPELARVSSDGIIIFTGYPGQPRAKIAPLSKFGRPLGTSQRISA*

>Glyma17g17000.4   sequence type=predicted peptide   gene model=Glyma17g17000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRKQASSTRRGGLSGVLHSKSKSSPLLSISLVLFVAILLILYACIGSGILGGRKDVISMAEDDFSCTFEVPSAIPVLKNAYGGSMKNVLHVGPESCSVVSKFLREGETEAWGVEPYDLDDADRNCKALVQKGIIRVADIKFPLPYRVKSFSHVIVSDALDYLSPKYINKTLPELARVSSDGIIIFTGYPGQPRAKIAPLSKFGRPHRC*

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