SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37770 | AT | Annotation by Michelle Graham. TAIR10: 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469 | SoyBase | E_val: 0 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0042218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016847 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| KOG0256 | KOG | 1-aminocyclopropane-1-carboxylate synthase, and related proteins | JGI | ISS | |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF26 | Panther | TRANSCRIPTION REGULATOR AMINOTRANSFERASE GNTR-RELATED | JGI | ISS | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | ISS | |
| UniRef100_I1MVH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MVH7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SEE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylic acid synthase n=1 Tax=Vigna radiata var. radiata RepID=Q9SEE8_VIGRR | SoyBase | E_val: 0 | ISS |
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Glyma17g16990 not represented in the dataset |
Glyma17g16990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g23020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g158100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g16990.1 sequence type=CDS gene model=Glyma17g16990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGACTTTTGTCCACAAAAGCAACGTGCAATAGTCACGGCCAAGATTCTTCATACTTTCTAGGATGGCAGGAATACGAGAAAAACCCTTATGATGAGGTCCATAATCCCAAAGGGATTATCCAAATGGGTCTCGCAGAGAATCAGCTCTCATTCGACCTCCTAGAGTCATGGCTCGCAAAGAACCCTGACGTGGCAGGGTTCAAACGTGACGGCAAATCCATATTCAGAGAACTCGCTCTCTTCCAAGACTACCATGGCCTCCCTTCATTCAAAAAGGCATTGGTGGATTTCATGGCCGAAATCAGAGGAAACAAAGTCACTTTCGACCCCAACCACATCGTTCTCACCGCCGGCGCCACCTCCGCAAACGAAACCTTAATGTTCTGTCTCGCCGAACAAGGCGAAGCATTCCTCCTCCCCACTCCTTATTACCCAGGATTCGACAGAGACCTAAAGTGGAGAACCGGGGTTGAGATTGTTCCAATCCAATGCAACAGTTCCAACAACTTCCAAATCACGGAGGCAGCATTGCAACAAGCCTACGAGGATGCGATGAAGCTCAACCTAAGAGTGAAGGGCGTTTTGGTCACGAACCCGTCAAACCCATTAGGCACCACAATGTCTCGGAGTGAACTGAACCTTCTGGTCGACTTCATCAAAGAGAAAAACGACATTCATTTGATAAGCGACGAGATATACTCCGGCACCGTTTTTAGCTCCCCAGGCTTCGTCAGCGTCATTGAAATTCTCAAGGAACGAAACGACGTCACTGACGGAGACTGGAATAGAGTTCACGTCGTCTATAGTCTCTCAAAAGACTTGGGTTTGCCGGGGTTCCGCGTCGGCGCTATTTACTCCGAAAATGACACCGTGGTTGCCGCGGCGACGAAGATGTCGAGCTTTGGTCTTGTTTCTTCGCAAACGCAGTACCTCCTCTCTGCCATGCTGGGGGACAAGAAGTTCACCAGAAACTACATAGCTGAAAACAAAAAGAGGCTTAAACGACAACAGAAAATGCTCGTTTCGGGGTTATTAAAGACCGGTATTCCTTGCCTCGACAGCAATGCGGGGCTGTTTTGTTGGGTAGACATGAGACAACTTTTGTATTCGAACACGTTCGAGGCGGAGATGGAGCTGTGGAAGAAGATAGTGTACCAAGTTGGGCTGAACATTTCGCCTGGCTCCTCGTGCCATTGCACCGAGCCAGGGTGGTTCCGCGTGTGTTTCGCGAACATGTCCGAGGAGACTCTGGCCTTGGCCATGAAACGCTTGAAGAACTTCGTGGCGGCTGAGTCTCAGAGGAATAGTGGTAGTAATGGTGGTGCTCTGTTCAACAACAATGGAAGCTCCAAGAGAAAGTCACTCACCAAGTGGGTTTTTCGGTTATCGTCTCGCGATCATCGTCGTGAACAAGAAGAACGGTAG
>Glyma17g16990.1 sequence type=predicted peptide gene model=Glyma17g16990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLLSTKATCNSHGQDSSYFLGWQEYEKNPYDEVHNPKGIIQMGLAENQLSFDLLESWLAKNPDVAGFKRDGKSIFRELALFQDYHGLPSFKKALVDFMAEIRGNKVTFDPNHIVLTAGATSANETLMFCLAEQGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCNSSNNFQITEAALQQAYEDAMKLNLRVKGVLVTNPSNPLGTTMSRSELNLLVDFIKEKNDIHLISDEIYSGTVFSSPGFVSVIEILKERNDVTDGDWNRVHVVYSLSKDLGLPGFRVGAIYSENDTVVAAATKMSSFGLVSSQTQYLLSAMLGDKKFTRNYIAENKKRLKRQQKMLVSGLLKTGIPCLDSNAGLFCWVDMRQLLYSNTFEAEMELWKKIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEETLALAMKRLKNFVAAESQRNSGSNGGALFNNNGSSKRKSLTKWVFRLSSRDHRREQEER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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