Glyma17g16890 - SoyBase

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Report for Sequence Feature Glyma17g16890

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13702298
stop:	13704618
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g16890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65730	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 6 \| chr5:26299080-26300290 FORWARD LENGTH=292	SoyBase	E_val: 4.00E-166	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PTHR10963	Panther	SECRETED GLUCOSIDASE-RELATED	JGI		ISS
PTHR10963:SF14	Panther	BETA-GLUCANASE	JGI		ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI		ISS
UniRef100_G7JF94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglycosylase hydrolase n=1 Tax=Medicago truncatula RepID=G7JF94_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K2H6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K2H6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g16890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16890

Paralog	Evidence	Comments
Glyma05g23170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g157400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g16890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g16890

Limit To All Plant Sequences

>Glyma17g16890.2   sequence type=CDS   gene model=Glyma17g16890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGTTTTACCAATTTAGGAATGCTGGTGTCTTTTTTTTCCTTTGTGTTCTTCTCTTATCTGGTGTGTGTGTTTTGGGTCGACCAGCCACTTTTCTACAAGACTTTCATGTCACGTGGTCTGACTCCCACATCAGGCAATTTGATCAAGGCAGGGCAATCCAACTCAGACTTGACCAAAGCTCTGGATGTGGGTTTGCTTCCAAGGTGAAGTACATGTTTGGGCGTGTTAGCATGAAGATCAAACTCGTCCCTGGAGACTCTGCTGGCACAGTCACTGCATTTTATTTGAACTCTGACACGAATTATGTTCGTGACGAGCTTGATTTCGAGTTCTTGGGGAACCGTACTGGGCAACCTTACACAGTTCAAACAAACATCTACGCTCATGGAAAGGGTGACAGAGAACAGAGGGTCAACCTCTGGTTTGACCCTGCTGCGGACTTCCACACCTATTCAATTCTCTGGAACCATCACCATATTGTATTCTACGTGGATGATTTTCCAATCAGAGTATACAAGAACAACGAGGCCAGGGGGATTCCATACCCAAAGATGCAAGCAATGGGAGTGTATTCAACATTATGGGAAGCAGATAACTGGGCCACAAGGGGTGGATTGGAGAAAATAGATTGGAGCAAAGCACCATTCTATGCTTACTACAAGGACTTCGACATTGAAGGATGTGCAATGCCAGGACCTGCAAACTGTGCCTCCAACCCAAGTAACTGGTGGGAAGGGGCTGCATACCAAGCCCTTAACTCCATTGAAGCAAGAAGGTACAGGTGGGTTCGTGTGAACCATGTCATCTATGACTATTGTAAGGATAAGTCAAGGTTCCCAGTGACCCCACCAGAGTGCCTTGCTGGCATTTAA

Predicted protein sequences of Glyma17g16890

Limit To All Plant Sequences

>Glyma17g16890.2   sequence type=predicted peptide   gene model=Glyma17g16890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMFYQFRNAGVFFFLCVLLLSGVCVLGRPATFLQDFHVTWSDSHIRQFDQGRAIQLRLDQSSGCGFASKVKYMFGRVSMKIKLVPGDSAGTVTAFYLNSDTNYVRDELDFEFLGNRTGQPYTVQTNIYAHGKGDREQRVNLWFDPAADFHTYSILWNHHHIVFYVDDFPIRVYKNNEARGIPYPKMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCAMPGPANCASNPSNWWEGAAYQALNSIEARRYRWVRVNHVIYDYCKDKSRFPVTPPECLAGI*

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