Glyma17g16840 - SoyBase

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Report for Sequence Feature Glyma17g16840

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13631523
stop:	13633439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g16840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37830	AT	Annotation by Michelle Graham. TAIR10: cytochrome c oxidase-related \| chr4:17787672-17788762 REVERSE LENGTH=102	SoyBase	E_val: 4.00E-47	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005751	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex IV	SoyBase	N/A	ISS
GO:0004129	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity	SoyBase	N/A	ISS
KOG3469	KOG	Cytochrome c oxidase, subunit VIa/COX13	JGI		ISS
PTHR11504	Panther	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	JGI		ISS
PF02046	PFAM	Cytochrome c oxidase subunit VIa	JGI		ISS
UniRef100_I1MVG5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVG5_SOYBN	SoyBase	E_val: 7.00E-71	ISS
UniRef100_Q9T070	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit 6a, mitochondrial n=2 Tax=Arabidopsis thaliana RepID=COX6A_ARATH	SoyBase	E_val: 2.00E-44	ISS

Expression Patterns of Glyma17g16840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16840

Paralog	Evidence	Comments
Glyma05g23220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g157000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g16840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g16840

Limit To All Plant Sequences

>Glyma17g16840.2   sequence type=transcript   gene model=Glyma17g16840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTTTCACATATAGGTAGCTCCTATTGTTTCTTACCCCTTCAAAGCCAAAACAGAACAAAAAAGAGTCAAGCGGCGAGCAATGGCGACATCGCTGGTGCGATCGGGTTTTCTTCGTAGCGCCCTACGAGGAAGAGCTCGTAGCTCTCAGGTTCCCAAGCGAAACTTTGCTTCCTCTGGTCATCACGATGATGCATATGAGACGGCCAAATGGGAGAAGATTACATATTTAGGCATTGTTGGTTGCACCGGTTTAGCCGTTTATAATCTATCAAAGGGCCACCCGCACTTCAAAGAACCTCCTGCATACCCATATTTGCATATCCGCAATAAGGAATTCCCCTGGGGTCCCGATGGACTATTTGAAACGAAGCACCACGACGAGCATTAATGGTTTAATGAAGGTATTTGTGACACCGGTGGGCTTTGGATTTGTCAATGTTCAAGAAATAGTGATGATTATTGTGGTTTTTGAAATGTGATCTAGAACTTGCACTTGACAACGTTAGTTTGTCATGTTTTTATGTCATGTTCGTTCGTATGGTTGAGGAACAAAATAAAATTGTCAAACAATATGATGCTTCTTCCTAGCCGATTCTTGTTCAATAAGATTTTTAAAGAAAATGATCTTAAGACCCCTGATTTTTATCATTTTCTCATCTCTCTAGTTTTTGTTGTTTCGATTGTGGTGTTTTTGGGAATAGGTAGGTATTTAGCATCACC

Coding sequences of Glyma17g16840

Limit To All Plant Sequences

>Glyma17g16840.1   sequence type=CDS   gene model=Glyma17g16840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACATCGCTGGTGCGATCGGGTTTTCTTCGTAGCGCCCTACGAGGAAGAGCTCGTAGCTCTCAGGTTCCCAAGCGAAACTTTGCTTCCTCTGGTCATCACGATGATGCATATGAGACGGCCAAATGGGAGAAGATTACATATTTAGGCATTGTTGGTTGCACCGGTTTAGCCGTTTATAATCTATCAAAGGGCCACCCGCACTTCAAAGAACCTCCTGCATACCCATATTTGCATATCCGCAATAAGGAATTCCCCTGGGCAGGTCCCGATGGACTATTTGAAACGAAGCACCACGACGAGCATTAA

>Glyma17g16840.2   sequence type=CDS   gene model=Glyma17g16840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACATCGCTGGTGCGATCGGGTTTTCTTCGTAGCGCCCTACGAGGAAGAGCTCGTAGCTCTCAGGTTCCCAAGCGAAACTTTGCTTCCTCTGGTCATCACGATGATGCATATGAGACGGCCAAATGGGAGAAGATTACATATTTAGGCATTGTTGGTTGCACCGGTTTAGCCGTTTATAATCTATCAAAGGGCCACCCGCACTTCAAAGAACCTCCTGCATACCCATATTTGCATATCCGCAATAAGGAATTCCCCTGGGGTCCCGATGGACTATTTGAAACGAAGCACCACGACGAGCATTAA

Predicted protein sequences of Glyma17g16840

Limit To All Plant Sequences

>Glyma17g16840.1   sequence type=predicted peptide   gene model=Glyma17g16840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLVRSGFLRSALRGRARSSQVPKRNFASSGHHDDAYETAKWEKITYLGIVGCTGLAVYNLSKGHPHFKEPPAYPYLHIRNKEFPWAGPDGLFETKHHDEH*

>Glyma17g16840.2   sequence type=predicted peptide   gene model=Glyma17g16840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLVRSGFLRSALRGRARSSQVPKRNFASSGHHDDAYETAKWEKITYLGIVGCTGLAVYNLSKGHPHFKEPPAYPYLHIRNKEFPWGPDGLFETKHHDEH*

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