Report for Sequence Feature Glyma17g16750
Feature Type: gene_model
Chromosome: Gm17
Start: 13546148
stop: 13550821
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g16750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37840 AT
Annotation by Michelle Graham. TAIR10: hexokinase-like 3 | chr4:17790147-17792198 REVERSE LENGTH=493
SoyBase E_val: 2.00E-177 ISS
GO:0001666 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hypoxia
SoyBase N/A ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006970 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to osmotic stress
SoyBase N/A ISS
GO:0006974 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus
SoyBase N/A ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0004396 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hexokinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016773 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor
SoyBase N/A ISS
KOG1369
KOG
Hexokinase
JGI ISS
PTHR19443 Panther
HEXOKINASE
JGI ISS
PF00349 PFAM
Hexokinase
JGI ISS
PF03727 PFAM
Hexokinase
JGI ISS
UniRef100_B9SSE4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hexokinase, putative n=1 Tax=Ricinus communis RepID=B9SSE4_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MVG1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MVG1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g16750
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g16750
Paralog Evidence Comments
Glyma05g23280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g16750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g156200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g16750
Coding sequences of Glyma17g16750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g16750.1 sequence type=CDS gene model=Glyma17g16750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAAAAATGTGGTGGTGGCAGTGAGCACAACAACTCTTGCGCTGGTAGTAGTAGGGGTATTGATCAGAAGGTGGAAGCGATGGAAAGAGCAACAGTTGTGGAAAACAAAGCAAATTATTCGAAAATTCGCTAGGGAATGTGCCACCCCAGTAACTAAACTTTGGCAGGTTGCTGATGATTTTGTCTCTAACATGAAAGTCTCTCTTGGTTCTTCCGATGAAAACTCCACTCTCAACATGGTGATCTCCAATGTTACATCACTCCCACTTGGAGATGAGGAAGGATTTTTTTATGGGGTTAATTTGCAAGGAAAGCATTTGTTGATGTTGTGTGCACGGCTAGGAGGAAAGAGTATGCCTATCTCTGCGTTACAAAGAGAAGAGATTTCCATCCCTGATGCTGTCTTGGCTGGTGCTTCTGAGGAAATAACTGATTACGTAGCTACAGAGATAGCTAAGTTTGTTTCGTTGCATCCTGAGATTCAAGATGGTGCACCCGCCAAAAAGAAGAAATTGGGCTTCACCTTGTCATATCCAGTGGACGAAGTTTTGCCTTTTGCGGCCACAACATTTCAACGGAAAAGCGCAAACAACCCAGTTCGCAAAGGAATGGTGAAAGACCTTAATAAAGCATTGACTAATCATGGAATGAAAATGCATGTTTCTTCACTGGTTGATGAAACTATCGGAGGTTTGGCCGGTGGAAGATACTATAACAGAGAGAGCGTGGCTGCAATTACCCTTGGCATGAACACAAACGCCGCTTATGTAGAATCGGCAGAAGAAGTTGCTAATGACCTTACACAATCTCCCAATTCAAGCGAGCTGGTAATTAGCATGGAGTGGGGAAAGTTCAATTCTCCTCATCTTCCTTTAACATCATTTGATGCGAGTGTAGATGCTGAAAGCTCAAATCCTGGTCGCGAGATTTTCGAAAAGCTTATTTCAGGAATGTATTTGGGAGAAGTTGTGAGACAGGTCTTGTTAAAGTTGGCCCGAGAAACAGCCTTATTTGGAAGCAACGTGCCTCCAAAGTTAATGACTCCATACTTACTAAGGTCTCCAGATATGGCAGCTATGCATCAAGACATGTCCGAGGATCGTGAAATAGTGAGTGAGAAACTCAGCGAGATTTTTGATATCGATAGTTGTAGCCTAATGGCAAGAGAAATGGTGGCAGAGGTGTGTGACATAGTGACGGAGCGTGGTGCACGCCTAGCCGGAGCCGGAATCGTGGGGATAATCAAGAAGCTTGGGAGAGTTGAGAACAGAAAGAGTGTGGTGACTGTGGAAGGAGGGCTTTATGAGCACTATCGCATCTTTAGAAACTACCTTCATAGCAGCATCTGGGAAATGCTCGGCAAGGATCTCTCAGACAATGTCATCGTTGAACATTCGCATGGTGGCTCTGGAACTGGTGCTTTGTTCCTTGCTGCTGCTCAAACTTATGCACACCGTGCGGATTCTTGA
Predicted protein sequences of Glyma17g16750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g16750.1 sequence type=predicted peptide gene model=Glyma17g16750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRKNVVVAVSTTTLALVVVGVLIRRWKRWKEQQLWKTKQIIRKFARECATPVTKLWQVADDFVSNMKVSLGSSDENSTLNMVISNVTSLPLGDEEGFFYGVNLQGKHLLMLCARLGGKSMPISALQREEISIPDAVLAGASEEITDYVATEIAKFVSLHPEIQDGAPAKKKKLGFTLSYPVDEVLPFAATTFQRKSANNPVRKGMVKDLNKALTNHGMKMHVSSLVDETIGGLAGGRYYNRESVAAITLGMNTNAAYVESAEEVANDLTQSPNSSELVISMEWGKFNSPHLPLTSFDASVDAESSNPGREIFEKLISGMYLGEVVRQVLLKLARETALFGSNVPPKLMTPYLLRSPDMAAMHQDMSEDREIVSEKLSEIFDIDSCSLMAREMVAEVCDIVTERGARLAGAGIVGIIKKLGRVENRKSVVTVEGGLYEHYRIFRNYLHSSIWEMLGKDLSDNVIVEHSHGGSGTGALFLAAAQTYAHRADS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
