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Report for Sequence Feature Glyma17g16741

Feature Type:gene_model
Chromosome:Gm17
Start:13534942
stop:13538153
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g16741
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37850AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328 SoyBaseE_val: 1.00E-55ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI ISS
PTHR12565:SF7Panther CENTROMERE-BINDING PROTEIN 1, CBP-1 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7JGD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH19 n=1 Tax=Medicago truncatula RepID=G7JGD6_MEDTR SoyBaseE_val: 2.00E-122ISS
UniRef100_UPI000233F3B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F3B2 related cluster n=1 Tax=unknown RepID=UPI000233F3B2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g16741
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g16741 not represented in the dataset
Glyma17g16741 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16741
ParalogEvidenceComments
Glyma05g23291 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16741 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g156100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g16741
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g16741
>Glyma17g16741.1   sequence type=CDS   gene model=Glyma17g16741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAAATTTCGTCAAACATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCTATGGATTCTTCATCAGCATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCATCCCCAAAGAACTCTTCCTCTCACAATAAGCGATTATTCAACTCAGAAAGCACACAAAACTCTTTCCACAAAAGTCCTCATGAACAATATTCTGTTGCCCCACCAAGACCAACCAAGCAAAATAAGACTGTGATGAGCACTACTTGGAGTGCTTACAACGCTCATCACCATCATCATGACATGGTGGCTCCGAAAGCTTCTTCTTCTTCGTCCTCCAAAATCATCTCTTTTGATCAGCACTCCAATGCATCTTCTGTTACTTCCCAACAACTCTACAACAACGTGGATGCGGCTGCCAAAGTGAAGAAGCCTAAGATTGAAACTGGGTATGGTGAAAACTTGGATTTTTCAGCAGCTGCTGCGGCTGCTTCTCAAAGTATCTGTGACAACAACAGTTTTCTAGATCACTATGATAATCAAGATAAAAAGGCTGCGGCTTCAACGACTAGAAACCCTACCCAAGCTCAAGATCATGTGATAGCCGAAAGAAAACGAAGGGAAAAGCTAAGTCAGAGGTTCATTGCTCTTTCTGCCATAGTTCCTGGACTCAAGAAGATGGACAAGGCTACCGTATTGGAAGATGCTATAAAGTACGTGAAACAACTGCAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAGATCTGTTGTGTTTGCCGGCGTTGATAGCTCCTCCTCCGACGAAAACTCCGACCAATCGCTCCCCGAAATGGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATTCACTGCGACAAAAACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATTATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTAAGATGAACAACGACTATTGCTTGACAGCAAAGGATCTCATAAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTGA
Predicted protein sequences of Glyma17g16741
>Glyma17g16741.1   sequence type=predicted peptide   gene model=Glyma17g16741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQISSNMYMPEFGMEDPTLFHQYPMDSSSALFQLEDLDFESFSASPKNSSSHNKRLFNSESTQNSFHKSPHEQYSVAPPRPTKQNKTVMSTTWSAYNAHHHHHDMVAPKASSSSSSKIISFDQHSNASSVTSQQLYNNVDAAAKVKKPKIETGYGENLDFSAAAAAASQSICDNNSFLDHYDNQDKKAAASTTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGVDSSSSDENSDQSLPEMEARISGKEVLIRIHCDKNSGGAAAILRELEKHYLTVQSSSFLPFGNNTLDITIVAKMNNDYCLTAKDLIRSLSQCLRQL*






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