Glyma17g16650 - SoyBase

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Report for Sequence Feature Glyma17g16650

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13384909
stop:	13385722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g16650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35290	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:14861635-14862000 REVERSE LENGTH=121	SoyBase	E_val: 5.00E-29	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MVF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVF4_SOYBN	SoyBase	E_val: 7.00E-89	ISS

Expression Patterns of Glyma17g16650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16650

Paralog	Evidence	Comments
Glyma05g23650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g155300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g16650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g16650

Limit To All Plant Sequences

>Glyma17g16650.1   sequence type=CDS   gene model=Glyma17g16650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGCTTGGTCATGCCATTATCATTGATCCGAAGACGCTCCATGGGGTACAGGCCCCTAACGAAGGACAAAGAATGTGACAGCCCTGTGACCGTGGTGGTCGGAAAAGAGAATAGGGTGTTCCTGGTGGACCCTTTCATATTACAAGAGAACCCTTTTCGGGTTTTGATGGACACGTCCATGAGGAAGCAGCTGGAGGAGGATCAAGAGGACAACAACAAGGATCATCATCATAATAATCTCCATCAACCTAGTAAGGTGGTCTTTGTCGATGTGGATGCCATTTTGTTCGAGCACATGTTGTGGCTCATGCACAATGATTGTTCTTCTTTGTTCGAGCTTAATTTGAAGGAGATTATTGACTTCTACGCTCAGGATATATGA

Predicted protein sequences of Glyma17g16650

Limit To All Plant Sequences

>Glyma17g16650.1   sequence type=predicted peptide   gene model=Glyma17g16650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCLVMPLSLIRRRSMGYRPLTKDKECDSPVTVVVGKENRVFLVDPFILQENPFRVLMDTSMRKQLEEDQEDNNKDHHHNNLHQPSKVVFVDVDAILFEHMLWLMHNDCSSLFELNLKEIIDFYAQDI*

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