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Report for Sequence Feature Glyma17g16641

Feature Type:gene_model
Chromosome:Gm17
Start:13374973
stop:13380965
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g16641
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17950AT Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein | chr4:9967295-9969007 REVERSE LENGTH=439 SoyBaseE_val: 8.00E-52ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PF03479PFAM Domain of unknown function (DUF296) JGI ISS
UniRef100_G7JGG3UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT-hook protein n=2 Tax=Medicago truncatula RepID=G7JGG3_MEDTR SoyBaseE_val: 8.00E-107ISS
UniRef100_I1K2J3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2J3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g16641
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g16641 not represented in the dataset
Glyma17g16641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16641
ParalogEvidenceComments
Glyma05g23660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16641 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g155200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g16641
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g16641
>Glyma17g16641.2   sequence type=transcript   gene model=Glyma17g16641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTAATTTATCTTTGGTCTTTACTACTACTACCCCCCTCTGTTCTCTGTGTACACTTTTCCCCCCTTTCTTAGTTTCATTACCTCACTCTTTCCGTATCAAAGTCAGGTGCGCTTTTTGTTCCTCGGTCTTTGAATTCACACTCTCACACATACACAGTAGTAGCAGTAGTTATAGTAGTGTCAAAACTCTCTCTCTCTCTCTCTCTCTCTATTCTCTTCTCTTTTCTTTCATCAATCATTTCATTTTTCATTCAATTCACCGATCGTTAGAGACAAACGCTCATTCGCCGCGTGATCCGACGCAATGGACGTACGCGAGACGCCCCGCCCACCGCCGCCCACCATGATGGTGGGCCCTACATCCTACGGTTCCACCAACCTCGGCCCTAATTTCTCCTCCTCCTCCGCCGCCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTTGGCGCCGTTCCTCCGCCGCAACAGCATCAGCCTCCGCCCTCGTCGGAGCCCTTCCCCGCCTCCGCCGCATATGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGGCGGCCCCGCAAATACTCGCCGGACGGTAGCATTGCCCTCGGCCTCGCTCCCACCCATACCTCGCCGCCCGCCTCCGCAGCCGCCGGAGGCGGAAGCGCCGGCGATTCGGCCGGCACAGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCGCCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATAATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTTACCCTTCGACAGCCTGCAATGTCTGGTGGTATTGCTACCTACGAGTGTAATAGGGATACTGTCAAGGTAATTTGGCCCTTCTGGGCAAAGGATCTGCAGAATTGGAAGTGCTTATATTTGTTGCATTTGTGTCTTTCAGTGCATAGCCTCTCTGTCTCCATTTCCTGCCAGTCTCATATTCATCCCACACCTGACTGTGTGTTTGGTTTAAAACATGCACTTTTGAATGTAACTCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGTGGAGTCGCTGGAACGCTAACTGCAGCATCAACTGTCATTGTGGGTAGCTTTATTGCGTTTGCGAAAAAGTCGAGCTCGAGTGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAATCCTCTGAGGAACAGGATCATAGTCCATTTTGTAGGGGGCCAGGGCCTGGACATGGACTCTATAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTGA
Coding sequences of Glyma17g16641
>Glyma17g16641.1   sequence type=CDS   gene model=Glyma17g16641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTACGCGAGACGCCCCGCCCACCGCCGCCCACCATGATGGTGGGCCCTACATCCTACGGTTCCACCAACCTCGGCCCTAATTTCTCCTCCTCCTCCGCCGCCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTTGGCGCCGTTCCTCCGCCGCAACAGCATCAGCCTCCGCCCTCGTCGGAGCCCTTCCCCGCCTCCGCCGCATATGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGGCGGCCCCGCAAATACTCGCCGGACGGTAGCATTGCCCTCGGCCTCGCTCCCACCCATACCTCGCCGCCCGCCTCCGCAGCCGCCGGAGGCGGAAGCGCCGGCGATTCGGCCGGCACAGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCGCCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATAATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTTACCCTTCGACAGCCTGCAATGTCTGGTGGTATTGCTACCTACGAGTGTAATAGGGATACTGTCAAGGTAATTTGGCCCTTCTGGGCAAAGGATCTGCAGAATTGGAAGTGCTTATATTTGTTGCATTTGTGTCTTTCAGTGCATAGCCTCTCTGTCTCCATTTCCTGCCAGTCTCATATTCATCCCACACCTGACTGTGTGTTTGGTTTAAAACATGCACTTTTGAATGTAACTCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGTGGAGTCGCTGGAACGCTAACTGCAGCATCAACTGTCATTGTGGGTAGCTTTATTGCGTTTGCGAAAAAGTCGAGCTCGAGTGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAATCCTCTGAGGAACAGGATCATAGTCCATTTTGTAGGGGGCCAGGGCCTGGACATGGACTCTATAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTGA

>Glyma17g16641.2   sequence type=CDS   gene model=Glyma17g16641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTACGCGAGACGCCCCGCCCACCGCCGCCCACCATGATGGTGGGCCCTACATCCTACGGTTCCACCAACCTCGGCCCTAATTTCTCCTCCTCCTCCGCCGCCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTTGGCGCCGTTCCTCCGCCGCAACAGCATCAGCCTCCGCCCTCGTCGGAGCCCTTCCCCGCCTCCGCCGCATATGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGGCGGCCCCGCAAATACTCGCCGGACGGTAGCATTGCCCTCGGCCTCGCTCCCACCCATACCTCGCCGCCCGCCTCCGCAGCCGCCGGAGGCGGAAGCGCCGGCGATTCGGCCGGCACAGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCGCCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATAATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTTACCCTTCGACAGCCTGCAATGTCTGGTGGTATTGCTACCTACGAGTGTAATAGGGATACTGTCAAGGTAATTTGGCCCTTCTGGGCAAAGGATCTGCAGAATTGGAAGTGCTTATATTTGTTGCATTTGTGTCTTTCAGTGCATAGCCTCTCTGTCTCCATTTCCTGCCAGTCTCATATTCATCCCACACCTGACTGTGTGTTTGGTTTAAAACATGCACTTTTGAATGTAACTCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGTGGAGTCGCTGGAACGCTAACTGCAGCATCAACTGTCATTGTGGGTAGCTTTATTGCGTTTGCGAAAAAGTCGAGCTCGAGTGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAATCCTCTGAGGAACAGGATCATAGTCCATTTTGTAGGGGGCCAGGGCCTGGACATGGACTCTATAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTGA
Predicted protein sequences of Glyma17g16641
>Glyma17g16641.1   sequence type=predicted peptide   gene model=Glyma17g16641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVRETPRPPPPTMMVGPTSYGSTNLGPNFSSSSAAAMLAPATARFPFGAVPPPQQHQPPPSSEPFPASAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGSIALGLAPTHTSPPASAAAGGGSAGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVIMVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLRQPAMSGGIATYECNRDTVKVIWPFWAKDLQNWKCLYLLHLCLSVHSLSVSISCQSHIHPTPDCVFGLKHALLNVTLAGSDGRVLGGGVAGTLTAASTVIVGSFIAFAKKSSSSALKSGSSSAPPPQMLTFGAPMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGHGLYNNASQPVHNMPMYHHPLWAGQSHQ*

>Glyma17g16641.2   sequence type=predicted peptide   gene model=Glyma17g16641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVRETPRPPPPTMMVGPTSYGSTNLGPNFSSSSAAAMLAPATARFPFGAVPPPQQHQPPPSSEPFPASAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGSIALGLAPTHTSPPASAAAGGGSAGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVIMVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLRQPAMSGGIATYECNRDTVKVIWPFWAKDLQNWKCLYLLHLCLSVHSLSVSISCQSHIHPTPDCVFGLKHALLNVTLAGSDGRVLGGGVAGTLTAASTVIVGSFIAFAKKSSSSALKSGSSSAPPPQMLTFGAPMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGHGLYNNASQPVHNMPMYHHPLWAGQSHQ*






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