Glyma17g16600 - SoyBase

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Report for Sequence Feature Glyma17g16600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	13335694
stop:	13338482
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g16600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32540	AT	Annotation by Michelle Graham. TAIR10: lsd one like 1 \| chr1:11768043-11769591 FORWARD LENGTH=154	SoyBase	E_val: 2.00E-74	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0034052	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:2000121	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of removal of superoxide radicals	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF06943	PFAM	LSD1 zinc finger	JGI		ISS
UniRef100_B5KLZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOL1 n=1 Tax=Bambusa oldhamii RepID=B5KLZ6_BAMOL	SoyBase	E_val: 6.00E-74	ISS
UniRef100_I1MVE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVE5_SOYBN	SoyBase	E_val: 1.00E-100	ISS

Expression Patterns of Glyma17g16600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16600

Paralog	Evidence	Comments
Glyma05g23710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g154800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g16600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g16600

Limit To All Plant Sequences

>Glyma17g16600.3   sequence type=transcript   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACATAAATACAACTTCCACTGAAAGGCCTTAACTTAACTCTTATAGTCTTTCTTATTCCTTCTGGAATCCTTCCCTTTAGTTTCATGCGCAAGGGGAAGAAGCAATTCATTTGACTCTTACTTTATTATTTGATTTGCCGGCACCCTCTTCTTCACGGGAGCTGAAAAAAAATGGGAGAAAGTGCTTTGTTCTCTGTGTAGAGTTTGGCAGAGAAAGATAACAACATTTTTTAGTCCTTTATAATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGTCAGTGTAATCTCTTATTCCTCACTAACTAGATTTTCTTTAAACTGTCTCTAGTCCCAATCATATTGAGAAGGATCCGTACAGGTGTGTGTGTGCCGGAATAGCACTTACCTTTCTCCCTATTCACTTGGAAGAGTAGAAATAGACTTAAGCCCAGTTTGGATAAATTTCTCCATAATTACTTACTTATAGGAAGGCAAAAAAAATAATTAAACTTCTTCCATAATTTAAAATTAACTTGTGCACTTAACTTTTATAAAAGTTTTTCATTTAACTTCTTCAGAAGCTAAGGTGCATTAGTTGATTTGAACTTATGGAAAAGCTTAATCCATTTTACCTTTTTATTTTCTTCTTTTATAAGTGCATATAGAGAAGTTTATTCAAACATGGCCTTAACTTTTTATTGGTTGCAAATAAGATCATTTTTTTTTCATTTAATGAATAAATAGAAGGAATGAAAATAGAGGGAATTTCTCCAATTTGAGAAGTGTTTTAAAGGGTGAGCAAAAATTAGAACTAGAGAAATTTTGTGATATAAGCAACGATTTACTCTGGTGTTACTAAATGATGCAGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAAAACATACAAAATAGCAAGGTCATTATAGACTCTACAACCTTGGTTTTGAGTTACATATCGCCCTTAAGGAATAAAGAGGTTATCAGATTGGAGAGGAAACTCGTTTCACGTGTATAGAGTTATTTTTTTGCCTTGCGTGATTGTATTAAATTATATTTTTGTTAGATTGGGTGTATGAAAAAACTATTTATGATAAGTTTTCTGTTTCTGATGAGTGTTTTG

>Glyma17g16600.4   sequence type=transcript   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCTTTCTAGTGTCCACTTATATCCTTTAATTTCTCTCTCTACTTAGTCAGCAGCAACTGGCAAGCTGCCACAGGACATGTTATACTGTAATGTATTTTCCCACTTCCCACAGTACATAAATACAACTTCCACTGAAAGGCCTTAACTTAACTCTTATAGTCTTTCTTATTCCTTCTGGAATCCTTCCCTTTAGTTTCATGCGCAAGGGGAAGAAGCAATTCATTTGACTCTTACTTTATTATTTGATTTGCCGGCACCCTCTTCTTCACGGGAGCTGAAAAAAAATGGGAGAAAGTGCTTTGTTCTCTGTGTAGAGTTTGGCAGAGAAAGATAACAACATTTTTTAGTCCTTTATAATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAAAACATACAAAATAGCAAGGTCATTATAGACTCTACAACCTTGGTTTTGAGTTACATATCGCCCTTAAGGAATAAAGAGGTTATCAGATTGGAGAGGAAACTCGTTTCACGTGTATAGAGTTATTTTTTTGCCTTGCGTGATTGTATTAAATTATATTTTTGTTAGATTGGGTGTATGAAAAAACTATTTATGATAAGTTTTCTGTTTCTGATGAGTGTTTTGAAAAATCCCATCGTTAGATTTTGGGTGTAAAGTTTATTTTCAGCTGTAGATAATTTGTACTATATTAGGAATAATAGATGCACAATAAGAAAGTAATTGACATAACCCTCACAATCACTAAATAAGTGGTTGAGAAGTATTTGGAATGGGTTTAAAGCCGAGAAAATCTCAACTACTCATTTACTTTTCTATGCATATATATATATATATATATATATATA

Coding sequences of Glyma17g16600

Limit To All Plant Sequences

>Glyma17g16600.2   sequence type=CDS   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGGTATTGTAGTACTAATTGTCTCTGAGGTTTAA

>Glyma17g16600.3   sequence type=CDS   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGTCAGTGTAATCTCTTATTCCTCACTAACTAGATTTTCTTTAAACTGTCTCTAG

>Glyma17g16600.4   sequence type=CDS   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA

Predicted protein sequences of Glyma17g16600

Limit To All Plant Sequences

>Glyma17g16600.2   sequence type=predicted peptide   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIVVLIVSEV*

>Glyma17g16600.3   sequence type=predicted peptide   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGVSVISYSSLTRFSLNCL*

>Glyma17g16600.4   sequence type=predicted peptide   gene model=Glyma17g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTTEQKFST*

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