SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46580 | AT | Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein | chr5:18897510-18899645 REVERSE LENGTH=711 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_G7JGI1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JGI1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233969C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233969C related cluster n=1 Tax=unknown RepID=UPI000233969C | SoyBase | E_val: 0 | ISS |
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Glyma17g16481 not represented in the dataset |
Glyma17g16481 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g23860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g153900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g16481.1 sequence type=CDS gene model=Glyma17g16481 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTCCACTGTCTACCGTTGTGGATGTGTATTTCACAGACACCAAAAGAACAAGATTTAGCATCACCACCACCCCTTGCAGGCAAAAAACCAATAGAAAATTCTTCATACACTGTGCTACTTCAAATTCCACTCCAGAAGCTCCTCCAACACCAACTTCAGACAACAACAACAAGAAGAAAAACACTTCCCTATCCGACCAACTCGCACCCCTTGCCAACAAAACCCTATCTTCCGCCACAAGAGACCAATCCTATGCGTTATCTAAGCCAAAATCCACATGGGTCAACCCCACCAAAGCAAAACGCTCTGTGTTATCCTCTGAGAGACAAAAACGTGCCACTTACTCTTATAGTCCGCAATTGAGAGATTTGAAACGCTTTGCTCAGAAACTGAACGAGTCTGGTTCCTCTGAAGACGCATTCTTGGCTTGTTTGGAGGAGATTCCGCGCCCAATTTCAAGAGAAAACGCGTTGCTGATACTCAACACGTTGAAGCCATGGCAAAAGACCAATCTTTTTCTGAACTGGATCAGGACCCAGAACTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTCTGAGGTTTGGGAAGCAGTTTGGGCTGATAGAAGAGCTTGCACACCAGATGATTGATAATGGGGTTCCACTTGACAACATCACTTACTCCACCATCATTTCCTGTGCCAAGAAGTGCAACCTCTATGACAAAGCAGTGCACTGGTTTGAGAGGATGTACAAGACCAGTTTGATGCCTGATGAGGAAATGGAGTCTGTTGGGGTGCAGCCTAATTTGGTTGTGTACAACACCTTGTTGGAGGCAATGGGAAAGGCCGGGAAGCCGGTGTTCGCCAGGGGGTTGTTTGAGGAAATGATTGAGTTGGGAATTGTGCCAAACGAGAAGACCCTGACGGCGGTTATTAAGATATACGGCAAGGCGAGGTGGTCGCGAGACGCATTGGAGTTGTGGCAACGGATGAAGGAGAACGGCTGGCCAATGGATTTTATCTTGTATAATACTTTGTTGAATATGTGTGCCGATGTTGGACTGGTGGAGGAAGCCGAGACTTTGTTCAGGGACATGAAGCAGTCTGCGCATTGCAAGCCGGACAGTTGGAGTTACACGGCGATGCTCAACATATATGGGAGTCAGGGAGATGTTGATAAGGCGATGAAATTGTTCAACGAGATGTGTAAGTCGGGCGTTGAACTCAACGTGATGGGGTTTACCTGTTTGATTCAGTGCTTGGGAAGGGCTACGGAGTTTGATGATTTGGTGAGAGTTTTTGGCATTTCAGTTGAGAGAGGAATTAAGCCAGATGATAGGCTGTGTGGTTGCTTGCTATCTGTTGTGTCTCTGTCTCAGGGTAGCAACGATGAGGAAAAAGTCCTCGCTTGTTTGCAGCGAGCAAACCCGAAATTGGTTGCCTTTATTCATTTGATTGAAGATGAAAAATCCAGTTTTGAGAGTGTCAAGGAAGAGTTCAAGGGTATCATGAGCAATGCAGCTGTTGAAGTGAGAAGACCCTTCTGTAACTGTTTGATTGACATATGTAGAAACAAAGATCTTCGAGAGAGAGCCCATGAGCTACTCTACTTGGGAACCTTATATGGATTATACCCAGGTTTACACAACAAAACTGACAATGAATGGTGTTTAGACGTTCGGTCATTATCGGTTGGTGCAGCTCTAACTGCGCTGGAAGAGTGGATGTGGACACTCACCAAAATCGTTAAGCGGGAGGAGACACTGCCTGAGCTATTCCTAGCCCAAACTGGTACTGGTGCTCATAAGTTTGCCCAAGGACTCAACATTTCTTTTGCCTCTCATTTGAGGAAACTAGCTGCTCCATTTAAGCAGAGTGAGGAAAAAATTGGCTGTTTTATTGCAAGTAGAGAGGATTTAGTCTCTTGGGTGCAATCAAAGTCTACTGCAGCTGCTACTGCTACATAG
>Glyma17g16481.1 sequence type=predicted peptide gene model=Glyma17g16481 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPLSTVVDVYFTDTKRTRFSITTTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDNNNKKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDAFLACLEEIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANPKLVAFIHLIEDEKSSFESVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLRERAHELLYLGTLYGLYPGLHNKTDNEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAATAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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