SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17100 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| KOG2849 | KOG | Placental protein 11 | JGI | ISS | |
| PTHR12439 | Panther | PUTATIVE SERINE PROTEASE-RELATED | JGI | ISS | |
| PTHR12439:SF6 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF09412 | PFAM | Endoribonuclease XendoU | JGI | ISS | |
| UniRef100_B9RUR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Placental protein 11, putative n=1 Tax=Ricinus communis RepID=B9RUR9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MVA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVA1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g16030 not represented in the dataset |
Glyma17g16030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g150200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g16030.1 sequence type=CDS gene model=Glyma17g16030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGTCTCATCAACGGCTTCATCAACGTTGCTCTCGGAGCTGATGGTGGCGATCGGGAAGAACAACAACACGGGAGAGACGACCGTAGTAGAAGCTCCTGGGCTGAAGTCGTCTCCCAGGATCAACAAGATCACCCTCTTCCTCATCACCAACACAAGGAACAATATCGTCCTCAGTACGAGGAGCCCCAATCTCAAAGTTCCTACAAACCCCAGAAGGTGGATGAAGGTGAAGATGGATGGCAGACTGTTGGTAGAAAGCCTTCAAGGCATCCACATAAGGTTCAAAAGGACAACTGGAACAGCTATAAACGACCTGCTGATGAGCAAGAATACTCTAATGAGGTTGAAGTTGGTGCTGATGTGGAGCCCTCAGAAGATGAACTTGCTGATCTGTCAAGAGCTTGTGAAAAACTCTGGGCTCTTGATTTAAATCGTTTGGTACCTGGCTTACACTATGAAATTGACTGTGGAGAAGGGAAAAAGGTATACCAAAAGGAAGATATGGCACAGGGGAGCTTGTTTACTTGGGTTAGCGATGATGTATTCAGAAAGCCTACATTTGCCCGTTTTCTTTCACTTTTAGATAATTACAATCCACATCAAGGATGTAAGGAAGTAGTCACATCTGAAGAGAGACAAGAGCAAGCTTCTTTCATAGAAGAAATCAGTAGAACAGCACCAATTAAGTATCTTCACAAGTATCTTGCATCCAAGCAAATTGTATCAGGGAATTACCAAGATTTCAAAAGAATGATTACCAGTCTGTGGTTTGACCTTTATGGCCGTGGTGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAACCAAACAATGTGGTGAAGTTTCTGGCTTTCATAACTGGCTGCAGTTTTACCTTGAAGAAGCAAAGGGGAGAGTTGATTATCAAGGATATATTTTTCCCCGTCGACGGGGAGAAACTCCTGACTCTGAAGCTCAGCTTCTGACTATTCAGTTTGAATGGAATGGTGTCCTAAAATCTGTATCCAGCACTTTGGTTGGAGTGAGCCCTGAATTTGAAATTGCTTTGTATACCCTGTGTTTCTATGTTGGTAGGGAGGATAACCACATTCAGCTTGGTCCATATGGGGTTAATATCAAGTGCTATCGATTGGGTGATCGAATTGGATCTGTTTTCCCCATTGCAGATTCTTGA
>Glyma17g16030.1 sequence type=predicted peptide gene model=Glyma17g16030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGLINGFINVALGADGGDREEQQHGRDDRSRSSWAEVVSQDQQDHPLPHHQHKEQYRPQYEEPQSQSSYKPQKVDEGEDGWQTVGRKPSRHPHKVQKDNWNSYKRPADEQEYSNEVEVGADVEPSEDELADLSRACEKLWALDLNRLVPGLHYEIDCGEGKKVYQKEDMAQGSLFTWVSDDVFRKPTFARFLSLLDNYNPHQGCKEVVTSEERQEQASFIEEISRTAPIKYLHKYLASKQIVSGNYQDFKRMITSLWFDLYGRGGTSGSSSAFEHVFVGETKQCGEVSGFHNWLQFYLEEAKGRVDYQGYIFPRRRGETPDSEAQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFYVGREDNHIQLGPYGVNIKCYRLGDRIGSVFPIADS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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