Glyma17g16020 - SoyBase

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Report for Sequence Feature Glyma17g16020

Feature Type:	gene_model
Chromosome:	Gm17
Start:	12701071
stop:	12704560
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g16020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17090	AT	Annotation by Michelle Graham. TAIR10: chloroplast beta-amylase \| chr4:9605266-9607250 REVERSE LENGTH=548	SoyBase	E_val: 0	ISS
GO:0000024	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose biosynthetic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016161	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF01373	PFAM	Glycosyl hydrolase family 14	JGI		ISS
UniRef100_Q5F305	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase n=1 Tax=Glycine max RepID=Q5F305_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5F305	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-amylase n=1 Tax=Glycine max RepID=Q5F305_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g16020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g16020

Paralog	Evidence	Comments
Glyma05g05750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g16020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g150100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g16020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g16020

Limit To All Plant Sequences

>Glyma17g16020.1   sequence type=CDS   gene model=Glyma17g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAACACTTCGTTCTTCAACTTCTTTTATTAATCAGAAGGAAACCAAAGTCCTCAAAACTTCTGACAATGCCCCTGCAATAGTTAGTTTTTCAAAATTCAAGCCATCATCATCATTGTTCCGGCTCCGGGCAAAAAATTCCATGCAAGAAGCTCATCACACTCGTGAGAAATGGGAGAAGGTGCTGGCTCCGTCGGTCGCACATAGCCACAATGATTCAAAGAGAGTACCTGTGTATGTGATGTTGCCATTAGACACAGTAACAATGGGAGGAAGCTTGAACAAGCCCAGAGCGATGAATGCGAGTTTGATGGCCCTGAAGAGTGCAGGGGTTGAAGGTGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAGAAAGAAGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAACTTGTGCAGATGCTGCAAATGCATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGAAATGTTGGAGACAATTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGAGCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCGGTTCCTGTTCTAAATGGAAGAACTCCTCTCCAAGTGTACTCTGACTACATGAGAAGCTTTCGTGACAAATTCAGAGATTACTTGGGCAGTGTTATCGTGGAAATACAATTGGGAATGGGTCCTTGTGGAGAGCTCAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAAGACATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTGGAACACGGTGAGAGGATCCTTGTATCTGCCAAAGGAATATTTGAAACAACTGGGGTGAAACTATCAGGGAAAGTTGCAGGAATCCACTGGCATTACAGAGCAAGATCTCACGCAGCTGAACTAACCGCTGGCTACTACAACACACGAAATAACGATGGATATCTGCCTATAGCAAGGATGCTCGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCAGACTTTGCAAACTGCTCACCTGAAGGGTTAGTTCACCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAGCTTGCGGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCAGAATCCGGCAGTGGATTGGCTGCATTCACATATCTAAGAATGAACAAGAGGTTGTTTGAAGCTGACAACTGGCGGCACCTAGTGGATTTCGTAAGAAGCATGTCTGAGGGTGGTCGGAGAGAGAGACTTCCGGCAGCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAAGCAACACAGGAAAAGCACACACAAGAGGCTGCTCTTGTGTAA

Predicted protein sequences of Glyma17g16020

Limit To All Plant Sequences

>Glyma17g16020.1   sequence type=predicted peptide   gene model=Glyma17g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTLRSSTSFINQKETKVLKTSDNAPAIVSFSKFKPSSSLFRLRAKNSMQEAHHTREKWEKVLAPSVAHSHNDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEPYAELVQMLQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPELVYTDRSGRRNPEYISLGCDSVPVLNGRTPLQVYSDYMRSFRDKFRDYLGSVIVEIQLGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEDIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGERILVSAKGIFETTGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESGSGLAAFTYLRMNKRLFEADNWRHLVDFVRSMSEGGRRERLPAADSHGSDLYVGHIKATQEKHTQEAALV*

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