Glyma17g15950 - SoyBase

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Report for Sequence Feature Glyma17g15950

Feature Type:	gene_model
Chromosome:	Gm17
Start:	12659347
stop:	12662468
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g15950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44680	AT	Annotation by Michelle Graham. TAIR10: casein kinase II beta subunit 4 \| chr2:18426898-18428166 REVERSE LENGTH=283	SoyBase	E_val: 4.00E-147	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0042753	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005956	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein kinase CK2 complex	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0019887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase regulator activity	SoyBase	N/A	ISS
KOG3092	KOG	Casein kinase II, beta subunit	JGI		ISS
PTHR11740	Panther	CASEIN KINASE II BETA CHAIN	JGI		ISS
PF01214	PFAM	Casein kinase II regulatory subunit	JGI		ISS
UniRef100_G7JYM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase II subunit beta-4 n=2 Tax=Medicago truncatula RepID=G7JYM7_MEDTR	SoyBase	E_val: 6.00E-156	ISS
UniRef100_I1MV91	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MV91_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g15950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g15950 not represented in the dataset	Glyma17g15950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g15950

Paralog	Evidence	Comments
Glyma05g05650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g15950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g149500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g15950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g15950

Limit To All Plant Sequences

>Glyma17g15950.2   sequence type=transcript   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGGGGTAATGATAAAAATCAAAAAATGGGGTTTGCTTAGTTTAAAGTTGGCACCTGGCAGCAAGTAGTAGTAACAATTTAGGATTGTGGTGTGTTGTTGTTGTTGTAGCTATCAGTAGGTGAATCCAAAACCCTAGCCCTCACTCTCACCACCATTTTTTCAATTCTTGAGCTATGTTTCAGGGATAATAGGGCAGGGATGTACAAAGAACGAGAGCGAGGTGGTGTTTCCGTTTCCGCCTCTAAATCCGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCCCGCCCCATCAACACCGCTTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAGACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTAAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTTTGATTATGCCCTTGATTTGATTCTCGACGTTGAGTCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCGGCGGCGGAAATGCTTTATGGTATGATTCATGCTCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAGCTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCGGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCGCGTTCCAAGTATCAAGGCAGTATCCTTATATCTATTACTTTACCCCTTTTTTGTGGGGGATTTGAGCTGATGCAGCTACATGTGACTGTGTTTCTGAAAGAAAAAAAATTTATTCTTGTGCCTCTCATTTCATTTTTGGTTGAGTTTCATCCTTGAGTCTGACCATAGCAGTTTGTAAGGATTCATCCTTTTTGGTTTATTTGGAAATTCATTTCTTACTTAAACCAGTTTGTGTTTGCTGTCCTGAAAGAAAAAAAAAAATTGCATATGGAGCATAAACTATTTTCTGAATATGATTAAACCATATATAAGAATTTCTGGAAACTCTGCTATATTTTTTCTTTTTTCTGAAAGTATACTTGTATGTCTTGTTCATTTGGACTATACTATACCGGTCCCTGATGGAAAGAGAAAGTAATATTCAGATAACGAGTAGTTTAAGTTTAGTTTTATGAGAAGTGGGGTTCATGATCTAGACATTTTAGTAAGAGATATCTGATATCTGCTAGATGTTTGATGATATATGAAAATTATACTGTATTTTCTTGTTTGACAAATTATATCTGCAATTTTACTTCCAGCTG

>Glyma17g15950.3   sequence type=transcript   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGGGGTAATGATAAAAATCAAAAAATGGGGTTTGCTTAGTTTAAAGTTGGCACCTGGCAGCAAGTAGTAGTAACAATTTAGGATTGTGGTGTGTTGTTGTTGTTGTAGCTATCAGTAGGTGAATCCAAAACCCTAGCCCTCACTCTCACCACCATTTTTTCAATTCTTGAGCTATGTTTCAGGGATAATAGGGCAGGGATGTACAAAGAACGAGAGCGAGGTGGTGTTTCCGTTTCCGCCTCTAAATCCGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCCCGCCCCATCAACACCGCTTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAGACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTAAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTTTGATTATGCCCTTGATTTGATTCTCGACGTTGAGTCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCGGCGGCGGAAATGCTTTATGGTATGATTCATGCTCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAGCTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCGGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCGCGTTCCAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGAACAACATTTCCACACCTCTTCTTGATGACTTATGGACAACTGAAGCCACAGAAACCAGCACAAGGCTATGTTCCGAGAGTTTTTGGGTTCAAAGTTCACAAGCCATAAAGCCGAAGTTGAAGCTTTCATGAAAGTAAAAATCTCCCCGTGTCTCATTTAACTCTTCTTATGGTTCTCTTTGCAACAACAGGCGAATCATATGCTTTCCAAACCAGTACAATCTAGGCATCTGTTTTACTTGTTATAGGAGCTTGTTGTAAAGAAATATGCAGACATGTGAAGCAAGTGCTTAGTTTCAGCTTCTGATTCAATGAGCAAGTGCTTAGGTACTCGATGGTACTTCTTAATGGCTTTTTACAAATTGTATTCTTGCAATTAACTTAATATTGTCTATGGTTATGTCTCGAATTACAAATACCCTGCTATTTTTATATTGTTTTATTCCATTTCTCCCCATTTCTGTAGCCTTTGAATTTGTGGATTTGATGCCAATGAATTCATACATTAATGATTTCCAAGTTCAGTTGCTTGGATGTTATACTCAGCTATCCAACATTATTGATTATATGGAATATGAATGCACAATATGACCTCAAGTCTGTCTGTCTTTCTCCTGAATATATGATTGCTGACTTG

Coding sequences of Glyma17g15950

Limit To All Plant Sequences

>Glyma17g15950.1   sequence type=CDS   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAAGAACGAGAGCGAGGTGGTGTTTCCGTTTCCGCCTCTAAATCCGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCCCGCCCCATCAACACCGCTTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAGACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTAAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTTTGATTATGCCCTTGATTTGATTCTCGACGTTGAGTCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCGGCGGCGGAAATGCTTTATGGTATGATTCATGCTCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAGCTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCGGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCGCGTTCCAAGTATCAAGGCATCTGTCTAGACATTGATGGAGCTTACTTTGGAACAACATTTCCACACCTCTTCTTGATGACTTATGGACAACTGAAGCCACAGAAACCAGCACAAGGCTATGTTCCGAGAGTTTTTGGGTTCAAAGTTCACAAGCCATAA

>Glyma17g15950.2   sequence type=CDS   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAAGAACGAGAGCGAGGTGGTGTTTCCGTTTCCGCCTCTAAATCCGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCCCGCCCCATCAACACCGCTTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAGACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTAAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTTTGATTATGCCCTTGATTTGATTCTCGACGTTGAGTCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCGGCGGCGGAAATGCTTTATGGTATGATTCATGCTCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAGCTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCGGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCGCGTTCCAAGTATCAAGGCAGTATCCTTATATCTATTACTTTACCCCTTTTTTGTGGGGGATTTGAGCTGATGCAGCTACATGTGACTGTGTTTCTGAAAGAAAAAAAATTTATTCTTGTGCCTCTCATTTCATTTTTGGTTGAGTTTCATCCTTGA

>Glyma17g15950.3   sequence type=CDS   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAAGAACGAGAGCGAGGTGGTGTTTCCGTTTCCGCCTCTAAATCCGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCCCGCCCCATCAACACCGCTTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAGACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTAAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTTTGATTATGCCCTTGATTTGATTCTCGACGTTGAGTCATCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCGGCGGCGGAAATGCTTTATGGTATGATTCATGCTCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAGCTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCGGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCGCGTTCCAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGAACAACATTTCCACACCTCTTCTTGATGACTTATGGACAACTGAAGCCACAGAAACCAGCACAAGGCTATGTTCCGAGAGTTTTTGGGTTCAAAGTTCACAAGCCATAA

Predicted protein sequences of Glyma17g15950

Limit To All Plant Sequences

>Glyma17g15950.1   sequence type=predicted peptide   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKERERGGVSVSASKSEDRKRINDVLDKHLERSSPSTSRPINTASKNSNLQVEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYFDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKSYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGICLDIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKVHKP*

>Glyma17g15950.2   sequence type=predicted peptide   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKERERGGVSVSASKSEDRKRINDVLDKHLERSSPSTSRPINTASKNSNLQVEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYFDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKSYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGSILISITLPLFCGGFELMQLHVTVFLKEKKFILVPLISFLVEFHP*

>Glyma17g15950.3   sequence type=predicted peptide   gene model=Glyma17g15950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKERERGGVSVSASKSEDRKRINDVLDKHLERSSPSTSRPINTASKNSNLQVEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYFDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKSYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKVHKP*

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