Glyma17g15893 - SoyBase

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Report for Sequence Feature Glyma17g15893

Feature Type:	gene_model
Chromosome:	Gm17
Start:	12616815
stop:	12621238
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g15893

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17615	AT	Annotation by Michelle Graham. TAIR10: calcineurin B-like protein 1 \| chr4:9817142-9818995 FORWARD LENGTH=213	SoyBase	E_val: 6.00E-105	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010107	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion import	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0019900	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF16	Panther		JGI		ISS
UniRef100_I1K0X0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0X0_SOYBN	SoyBase	E_val: 3.00E-130	ISS
UniRef100_Q5EE13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein n=1 Tax=Ammopiptanthus mongolicus RepID=Q5EE13_9FABA	SoyBase	E_val: 2.00E-112	ISS

Expression Patterns of Glyma17g15893

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g15893 not represented in the dataset	Glyma17g15893 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g15893

Paralog	Evidence	Comments
Glyma05g05580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g15893 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g149000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g15893

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g15893

Limit To All Plant Sequences

>Glyma17g15893.2   sequence type=transcript   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAACAGAGTGAATCTCTAAACTGTGCATATTATATAAGGCTTCATCACAAACTAACAATTACGCTTTTTTTTCCTCCCTCTCTCTCTCTATCTACGAACTCCGCGTAAACCCAAGTTTCTCTCTCTACCCTTTTTCTTTATACCAGCTTCTACCTCCGTCGCCGTACTCGCTCCGATACCAAGTTTCTGAACACGCACGCTTTCGAAGAGGTTAAGTTCGAGTACACCGGTACTGTGCTGTGCTGCCTTACCTGCATTTCTTCCATAATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAGGTTATGTGATTGATGGGACAATTGGATGTACCAAACACTGAGAATGGAATAGGTGCCATGCTTGATTAGTTAGCCTTAGTAAAATTGTAAATGACGTTTTTGCATTGAAATTTTCTAGCCACATCTCGAGTTAGTTCCTGTTTGGAAACCCTTTATTTTTAAGGGATATTTTTTAGTAGAGAATTTTGAAATGAGTTGCAATGAAAAAAATAACAATTTTTAAAACCGTTTGTCGTGAAAGAATTGGAATTCACAATTTGTAGAGGA

>Glyma17g15893.3   sequence type=transcript   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCATATTGCTTGTAATGGGATAAATCCAAATTCAAGGTCAATTTTTTTTATTTCTTTGATTACTTGATATGTTGTTTATTGTTTGCCCTTTTGCTTCATATGGCTCTAACTTGTTTTTGAAAAAGTATTCGTCAATAATTACGTAAATTATGTCTCTTTGTGACACCTGAGCTCATGGCCTTCATTTGTTAAGTTCGAGTACACCGGTACTGTGCTGTGCTGCCTTACCTGCATTTCTTCCATAATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAGGTTATGTGATTGATGGGACAATTGGATGTACCAAACACTGAGAATGGAATAGGTGCCATGCTTGATTAGTTAGCCTTAGTAAAATTGTAAATGACGTTTTTGCATTGAAATTTTCTAGCCACATCTCGAGTTAGTTCCTGTTTGGAAACCCTTTATTTTTAAGGGATATTTTTTAGTAGAGAATTTTGAAATGAGTTGCAATGAAAAAAATAACAATTTTTAAAACCGTTTGTCGTGAAAGAATTGGAATTCACAATTTGTAGAGGA

Coding sequences of Glyma17g15893

Limit To All Plant Sequences

>Glyma17g15893.1   sequence type=CDS   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTGATGATATATATTTCAGTTAAGTTCGAGTACACCGGTACTGTGCTGTGCTGCCTTACCTGCATTTCTTCCATAATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAG

>Glyma17g15893.2   sequence type=CDS   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAG

>Glyma17g15893.3   sequence type=CDS   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCATGAACTCGAAGTCTGTGAGGAAGTTTCCGGCACGGGAGGATTCTCTTGATCTTGCAGCGGAGACAGCTTTTACTGTCAATGAGGTTGAAGCACTGTTTGTGCTTTTTAGGAGCATCAGCAATTCTATTGTCAATGATGGACTGCTAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACATTTTTGCAAATCGGATCTTTGATTTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTGAGGTCAAGGAAATGTTAATTGCACTTCTTTTTGAGTCGGATATGAAGTTGGCAGATGATGTCATAGAAACAATTCTTGACAAGACTTTCGTGGAAGCTGACCTAAAGCAAGATGGGAAAATCGACACTGAAGAGTGGGAAACTTTTGTTAAAAGGAATCCGTCAGTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAATATCTTTCCCAAGTTTTATTTTTAACAGCACTAACGTGGAAAGGGTTGATGAAACAAGTACAAGGCTTTAG

Predicted protein sequences of Glyma17g15893

Limit To All Plant Sequences

>Glyma17g15893.1   sequence type=predicted peptide   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLMIYISVKFEYTGTVLCCLTCISSIMGCMNSKSVRKFPAREDSLDLAAETAFTVNEVEALFVLFRSISNSIVNDGLLSKEEFQLAIFKNKKKDNIFANRIFDLFDVKKLGVVDFEDFVRSLNVFHPNASLKDKIAFSFRLYDLHNTGFIERPEVKEMLIALLFESDMKLADDVIETILDKTFVEADLKQDGKIDTEEWETFVKRNPSVLKIMTLPYLRDITISFPSFIFNSTNVERVDETSTRL*

>Glyma17g15893.2   sequence type=predicted peptide   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCMNSKSVRKFPAREDSLDLAAETAFTVNEVEALFVLFRSISNSIVNDGLLSKEEFQLAIFKNKKKDNIFANRIFDLFDVKKLGVVDFEDFVRSLNVFHPNASLKDKIAFSFRLYDLHNTGFIERPEVKEMLIALLFESDMKLADDVIETILDKTFVEADLKQDGKIDTEEWETFVKRNPSVLKIMTLPYLRDITISFPSFIFNSTNVERVDETSTRL*

>Glyma17g15893.3   sequence type=predicted peptide   gene model=Glyma17g15893   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCMNSKSVRKFPAREDSLDLAAETAFTVNEVEALFVLFRSISNSIVNDGLLSKEEFQLAIFKNKKKDNIFANRIFDLFDVKKLGVVDFEDFVRSLNVFHPNASLKDKIAFSFRLYDLHNTGFIERPEVKEMLIALLFESDMKLADDVIETILDKTFVEADLKQDGKIDTEEWETFVKRNPSVLKIMTLPYLRDITISFPSFIFNSTNVERVDETSTRL*

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