Glyma17g15740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma17g15740): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma17g15740): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma17g15740

Feature Type:	gene_model
Chromosome:	Gm17
Start:	12459286
stop:	12463409
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g15740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07440	AT	Annotation by Michelle Graham. TAIR10: glutamate dehydrogenase 2 \| chr5:2356153-2358012 FORWARD LENGTH=411	SoyBase	E_val: 0	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004352	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate dehydrogenase (NAD+) activity	SoyBase	N/A	ISS
GO:0004353	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate dehydrogenase [NAD(P)+] activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016639	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG2250	KOG	Glutamate/leucine/phenylalanine/valine dehydrogenases	JGI		ISS
PTHR11606	Panther	GLUTAMATE DEHYDROGENASE	JGI		ISS
PF00208	PFAM	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	JGI		ISS
PF02812	PFAM	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	JGI		ISS
UniRef100_I1MV76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=I1MV76_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MV76	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=I1MV76_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g15740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g15740 not represented in the dataset	Glyma17g15740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g15740

Paralog	Evidence	Comments
Glyma05g05460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g15740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g148000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g15740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g15740

Limit To All Plant Sequences

>Glyma17g15740.1   sequence type=CDS   gene model=Glyma17g15740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCTCTTGCAGCTACCAACCGCAACTTTCAACGTGCAGCTCGCATTCTCGGTTTGGATTCCAAGCTTGAGAAGAGTCTCCTCATACCCTTCAGAGAAATCAAAGTTGAATGCACGATCCCCAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCCCGTGGTCCTATGAAGGGAGGGATTCGTTATCATCCTGAGGTTGACCCTGATGAAGTGAATGCTCTAGCTCAGCTGATGACATGGAAGACTGCTGTAGCAGACATTCCTTATGGAGGAGCAAAGGGTGGGATCGGCTGCAACCCAAGGGATCTGAGTATCAGTGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTGATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTTTTTGCAACTGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCGGATCACACATTTGTCATCCAGGGCTTTGGAAATGTGGGCACGTGGGCTGCTAAGTCTATTTTTGAGAGGGGGGGAAAGGTGATTGCTGTGAGTGACATCAGTGGTGCTATCAAAAACCTAAATGGAATCGACATCCTTGCCCTTCTGAAACACAAGGATGGCAATGGTGGAGTCTTGAAGGACTTCCCAGGTGCAGAAGCCATGGATCCAGATGAATTGCTTGTTCATGAATGCGATGTTCTTGTCCCTTGTGCCTTGGGTGGAGTTCTAAACAAGGAAAATGCTGCTGATGTGAAGGCAAAATTTATAATAGAAGCAGCAAATCACCCCACTGACCCTGATGCGGATGGGATCTTGTCTAAGAAAGGAGTCATTATATTACCTGATATTTATGCCAATGCTGGCGGAGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGTTTCATGTGGGATGAAGAGAAAGTGAACCGTGAGCTGAAGAAGTACATGACCAAAGCTTTCCAGGATATCAAGGCAATGTGTAAAATTCACAACTGTGACCTGCGAATGGGGGCATTCACTCTAGGAGTGAACCGTGTTGCCCGTGCTACCCTTTTGAGGGGTTGGGAAGCATAG

Predicted protein sequences of Glyma17g15740

Limit To All Plant Sequences

>Glyma17g15740.1   sequence type=predicted peptide   gene model=Glyma17g15740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALAATNRNFQRAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSISELERLTRVFTQKIHDLIGVQRDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVVFATEALFAEYGKSISDHTFVIQGFGNVGTWAAKSIFERGGKVIAVSDISGAIKNLNGIDILALLKHKDGNGGVLKDFPGAEAMDPDELLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPDADGILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWDEEKVNRELKKYMTKAFQDIKAMCKIHNCDLRMGAFTLGVNRVARATLLRGWEA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain