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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17550 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:9777938-9779738 REVERSE LENGTH=544 | SoyBase | E_val: 0 | ISS |
| GO:0008643 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate transport | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0055062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion homeostasis | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| KOG2533 | KOG | Permease of the major facilitator superfamily | JGI | ISS | |
| PTHR11662 | Panther | PHOSPHATE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11662:SF82 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07690 | PFAM | Major Facilitator Superfamily | JGI | ISS | |
| UniRef100_B9T0L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate transporter, putative n=1 Tax=Ricinus communis RepID=B9T0L8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MV62 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MV62_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g15580 not represented in the dataset |
Glyma17g15580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g05270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g146300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g15580.2 sequence type=transcript gene model=Glyma17g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTCATCTCTCTTATATATAATTTCGACACGTGTCAAATAGTTCCCATCTATTCAACAAAAAAAAAGCTCAAAGAACACAATGGAGTATATGAAAATGCAACAGTAGCCTAAAGCCGCCAAACTGAACGGTGGTGACGGCAACGTGATTCCACACCGCCCGTCCCAAACTCCACGTGTCACTCTCTCAATTCAGCAACCCCCTCCATTCTCGCTCCCCCCAAAAGCTTTTCCCTTTTCACCGCTCCAACATCGGAAGAAGAAGGGAAAAACAAAAAAAGAACAAGACGGATTAATGTCTCGGCACTGCGATTGTTGTTGTGGCGGAATCCCACCGGGGCTTCTACTAATCCGAGGAAAACAATGGAACCTCCAAACATATCGCTACATGGTTCTCCTCACCACCTTCATCGCTTACGCCTGCTACCACGCGTCGAGAAAACCCACCGGAATAGTGAAAAGCGTGTTATGCCCCGAACACAAAGGAACAAACCAGGGTTGGAGCCCATTCAACGGCCACGATGGAACGTCGAAGCTAGGTGAAATCGACGTGGCGTTCTTAGCGTGCTACTCGATGGGTATGTACGTGGCAGGTCACTTAGGAGACTCCCTCGACCTTCGCTTGTTCCTGACAACCGGAATGGTCGGTAGCGGGATATTCGTATCACTCTTCGGAATGGGGTACTTCTGGAACATGCACTCTTTTTTGTTCTACCTTTCAATGCAAATGATTGCTGGCATGTTTCAGGCTACCGGGTGGCCTTCGGTTGTGGCGGTTATCGGTAACTGGTTCGGGAAGAGAAAGAGAGGGCTCATAATGGGGGTTTGGAACGCGCATACCTCGGTGGGTAACATTAGTGGATCCCTTCTTGCGGCGAGTGTTTTGGAGTATGGTTGGGGTTGGTCTTTTGTTGTGCCTGGTGTGGTGATTGTTCTTGGTGGGGTTCTTGTGTATTTGTTTCTGGCTCCTTATCCCGAGGATGTTGGGTTCTCTTGTGTTCATGGGGGTGGTGGTGGTGGTGATGAAGAGGCTCAGGTGAATGGTGTGAAAAAAGGTGGCGGTGGCGGTGGTGTTGCTCCTCCTACTAGAGAAGGCTCTGTGAATAGAAAAAGCGTTGGGCTTGTTGAGGCGTGCATGATTCCTGGTGTTATACCTTTTGCGCTGTGTCTTTTCTTCGCCAAGCTTGTTGCCTACACGTTCTTGTATTGGTTGCCCTTTTACTTGACTCAGACAGGTCTTTGGTTAAAAGCGTATCAAAATCTCTCTTCTGGTTGTTTTTGTTTAAATTACAAAAGTTTTGCATTTGATGATGGGGCACGACCAATTCCATTGAAATGTAAATTGCATGGGTCATAAACTTTTATATCTACATGTAGCAGAAATTGGTGGGAAGTATATCTCTGTTAAGTCTGCTGGGAACCTTTCAGCCTTGTTCGATGTAGGGGGCATTTTTGGGGGTATTCTTGCTGGCTACGTATCTGATAAACTCAATGCCCGTGCTATAACTGCGGCCAGCTTCATGTATGCAGCGATTCCTTCTATGCTTTTATACCGGCATTACGGAAGTGTTTCTATGAATGCCAACATTGGACTTATGATGGTGTCTGGATTATTTGTAAATGGACCTTATGCACTTATCACCACTGCTGTCTCTGCTGACTTGGGTACACATAGTTCTCTCAAAGGAGATTCTCGTGCTCTAGCTACAGTCACTGCTATTATAGATGGTACTGGATCTGTTGGTGCAGCTCTTGGCCCTCTTCTCACTGGGTTCATTTCATCGAGGGGATGGGATGAAGTTTTCATGATGTTAGTTCTTGGTGCTTTTATTGCGGGGCTTCTTTTGTCGCGTTTGATCATAGCAGAAATTGCAGAGAGAAGTGGCAAACCTTTATCAAGTGGACAGCAAAACCCAGAAGCCACTGCATCTCAACCGCTTCTGGAGGAAAGGTGACACGGATCAGGTCCTCACGAATCATTGTATATAATGCTCAATACATGGGTTGTAATATGAGAAAGTTGTAAGATTTTTGTTAATAACTCTGACTCCAGCATGCATCACCCACTTCATTGTTCATTTTACTGATGAGTAAATCAACAAGTAGACTTTAAAAAATCCATTCATTCAGCTCTCCAACGATCAATTTGTTGTCTAGACTCTGGAAGGTTCCAAAGGGGATCACAACTCACAACTGGGGATGGAACTTGATCTCTTTTCATCGTGAATTGATTTTCTCAAGGGACAATTGTGGAGATTTACTGCTCGCACTGAATCATCTTGACACCAGATATTCCAAAGTGACATTTGTTCCCTTAATCCTTGTGTCACACTCATTTTGAAGGAGCCTCCGTTTTCAATTTTGTCTGCAGCAGATTAGAATATAATACAGCCAAGTTTCTATCTTGATCACAACCCAAATCCCCCTCCACCCATCTCAAATTTTGTTATCATAAGGTGTTTAGTTAATTCAACCTGTACATGAAAATAAATAAATGAATATATCTCGGTGC
>Glyma17g15580.1 sequence type=CDS gene model=Glyma17g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCGGCACTGCGATTGTTGTTGTGGCGGAATCCCACCGGGGCTTCTACTAATCCGAGGAAAACAATGGAACCTCCAAACATATCGCTACATGGTTCTCCTCACCACCTTCATCGCTTACGCCTGCTACCACGCGTCGAGAAAACCCACCGGAATAGTGAAAAGCGTGTTATGCCCCGAACACAAAGGAACAAACCAGGGTTGGAGCCCATTCAACGGCCACGATGGAACGTCGAAGCTAGGTGAAATCGACGTGGCGTTCTTAGCGTGCTACTCGATGGGTATGTACGTGGCAGGTCACTTAGGAGACTCCCTCGACCTTCGCTTGTTCCTGACAACCGGAATGGTCGGTAGCGGGATATTCGTATCACTCTTCGGAATGGGGTACTTCTGGAACATGCACTCTTTTTTGTTCTACCTTTCAATGCAAATGATTGCTGGCATGTTTCAGGCTACCGGGTGGCCTTCGGTTGTGGCGGTTATCGGTAACTGGTTCGGGAAGAGAAAGAGAGGGCTCATAATGGGGGTTTGGAACGCGCATACCTCGGTGGGTAACATTAGTGGATCCCTTCTTGCGGCGAGTGTTTTGGAGTATGGTTGGGGTTGGTCTTTTGTTGTGCCTGGTGTGGTGATTGTTCTTGGTGGGGTTCTTGTGTATTTGTTTCTGGCTCCTTATCCCGAGGATGTTGGGTTCTCTTGTGTTCATGGGGGTGGTGGTGGTGGTGATGAAGAGGCTCAGGTGAATGGTGTGAAAAAAGGTGGCGGTGGCGGTGGTGTTGCTCCTCCTACTAGAGAAGGCTCTGTGAATAGAAAAAGCGTTGGGCTTGTTGAGGCGTGCATGATTCCTGGTGTTATACCTTTTGCGCTGTGTCTTTTCTTCGCCAAGCTTGTTGCCTACACGTTCTTGTATTGGTTGCCCTTTTACTTGACTCAGACAGAAATTGGTGGGAAGTATATCTCTGTTAAGTCTGCTGGGAACCTTTCAGCCTTGTTCGATGTAGGGGGCATTTTTGGGGGTATTCTTGCTGGCTACGTATCTGATAAACTCAATGCCCGTGCTATAACTGCGGCCAGCTTCATGTATGCAGCGATTCCTTCTATGCTTTTATACCGGCATTACGGAAGTGTTTCTATGAATGCCAACATTGGACTTATGATGGTGTCTGGATTATTTGTAAATGGACCTTATGCACTTATCACCACTGCTGTCTCTGCTGACTTGGGTACACATAGTTCTCTCAAAGGAGATTCTCGTGCTCTAGCTACAGTCACTGCTATTATAGATGGTACTGGATCTGTTGGTGCAGCTCTTGGCCCTCTTCTCACTGGGTTCATTTCATCGAGGGGATGGGATGAAGTTTTCATGATGTTAGTTCTTGGTGCTTTTATTGCGGGGCTTCTTTTGTCGCGTTTGATCATAGCAGAAATTGCAGAGAGAAGTGGCAAACCTTTATCAAGTGGACAGCAAAACCCAGAAGCCACTGCATCTCAACCGCTTCTGGAGGAAAGGTGA >Glyma17g15580.2 sequence type=CDS gene model=Glyma17g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCGGCACTGCGATTGTTGTTGTGGCGGAATCCCACCGGGGCTTCTACTAATCCGAGGAAAACAATGGAACCTCCAAACATATCGCTACATGGTTCTCCTCACCACCTTCATCGCTTACGCCTGCTACCACGCGTCGAGAAAACCCACCGGAATAGTGAAAAGCGTGTTATGCCCCGAACACAAAGGAACAAACCAGGGTTGGAGCCCATTCAACGGCCACGATGGAACGTCGAAGCTAGGTGAAATCGACGTGGCGTTCTTAGCGTGCTACTCGATGGGTATGTACGTGGCAGGTCACTTAGGAGACTCCCTCGACCTTCGCTTGTTCCTGACAACCGGAATGGTCGGTAGCGGGATATTCGTATCACTCTTCGGAATGGGGTACTTCTGGAACATGCACTCTTTTTTGTTCTACCTTTCAATGCAAATGATTGCTGGCATGTTTCAGGCTACCGGGTGGCCTTCGGTTGTGGCGGTTATCGGTAACTGGTTCGGGAAGAGAAAGAGAGGGCTCATAATGGGGGTTTGGAACGCGCATACCTCGGTGGGTAACATTAGTGGATCCCTTCTTGCGGCGAGTGTTTTGGAGTATGGTTGGGGTTGGTCTTTTGTTGTGCCTGGTGTGGTGATTGTTCTTGGTGGGGTTCTTGTGTATTTGTTTCTGGCTCCTTATCCCGAGGATGTTGGGTTCTCTTGTGTTCATGGGGGTGGTGGTGGTGGTGATGAAGAGGCTCAGGTGAATGGTGTGAAAAAAGGTGGCGGTGGCGGTGGTGTTGCTCCTCCTACTAGAGAAGGCTCTGTGAATAGAAAAAGCGTTGGGCTTGTTGAGGCGTGCATGATTCCTGGTGTTATACCTTTTGCGCTGTGTCTTTTCTTCGCCAAGCTTGTTGCCTACACGTTCTTGTATTGGTTGCCCTTTTACTTGACTCAGACAGGTCTTTGGTTAAAAGCGTATCAAAATCTCTCTTCTGGTTGTTTTTGTTTAAATTACAAAAGTTTTGCATTTGATGATGGGGCACGACCAATTCCATTGAAATGTAAATTGCATGGGTCATAA
>Glyma17g15580.1 sequence type=predicted peptide gene model=Glyma17g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRHCDCCCGGIPPGLLLIRGKQWNLQTYRYMVLLTTFIAYACYHASRKPTGIVKSVLCPEHKGTNQGWSPFNGHDGTSKLGEIDVAFLACYSMGMYVAGHLGDSLDLRLFLTTGMVGSGIFVSLFGMGYFWNMHSFLFYLSMQMIAGMFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFVVPGVVIVLGGVLVYLFLAPYPEDVGFSCVHGGGGGGDEEAQVNGVKKGGGGGGVAPPTREGSVNRKSVGLVEACMIPGVIPFALCLFFAKLVAYTFLYWLPFYLTQTEIGGKYISVKSAGNLSALFDVGGIFGGILAGYVSDKLNARAITAASFMYAAIPSMLLYRHYGSVSMNANIGLMMVSGLFVNGPYALITTAVSADLGTHSSLKGDSRALATVTAIIDGTGSVGAALGPLLTGFISSRGWDEVFMMLVLGAFIAGLLLSRLIIAEIAERSGKPLSSGQQNPEATASQPLLEER* >Glyma17g15580.2 sequence type=predicted peptide gene model=Glyma17g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRHCDCCCGGIPPGLLLIRGKQWNLQTYRYMVLLTTFIAYACYHASRKPTGIVKSVLCPEHKGTNQGWSPFNGHDGTSKLGEIDVAFLACYSMGMYVAGHLGDSLDLRLFLTTGMVGSGIFVSLFGMGYFWNMHSFLFYLSMQMIAGMFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFVVPGVVIVLGGVLVYLFLAPYPEDVGFSCVHGGGGGGDEEAQVNGVKKGGGGGGVAPPTREGSVNRKSVGLVEACMIPGVIPFALCLFFAKLVAYTFLYWLPFYLTQTGLWLKAYQNLSSGCFCLNYKSFAFDDGARPIPLKCKLHGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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