Glyma17g15370 - SoyBase

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Report for Sequence Feature Glyma17g15370

Feature Type:	gene_model
Chromosome:	Gm17
Start:	12072158
stop:	12075235
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g15370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17440	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1639) \| chr4:9727848-9728823 FORWARD LENGTH=215	SoyBase	E_val: 4.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07797	PFAM	Protein of unknown function (DUF1639)	JGI		ISS
UniRef100_I1MV42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MV42_SOYBN	SoyBase	E_val: 6.00E-171	ISS
UniRef100_Q9C5E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3G60410 protein n=1 Tax=Arabidopsis thaliana RepID=Q9C5E4_ARATH	SoyBase	E_val: 4.00E-20	ISS

Expression Patterns of Glyma17g15370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g15370 not represented in the dataset	Glyma17g15370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g15370

Paralog	Evidence	Comments
Glyma05g04975	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g15370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g144400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g15370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g15370

Limit To All Plant Sequences

>Glyma17g15370.3   sequence type=transcript   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCGGTATCCACATTCCACCACTTCAGTGGGCTGGGCCGTGGAATTGAGATTGGGACCCTAAAATCCAAAAAGAAGAGAGAATGGAAGGGTAACAAAGAGAATAAGGCAAAGGGTAAAAATGCCAACAAGAGTCATTAGAATTTAAGCAGCAGAACACGAAGAAAGAAAGAAGGAATAAAATCAAACCAACTCTCTCCGATTTCCATACCATACCACACTCCTTCTTCCACCTTAAGCTGCGCAGCTTCTTCACTCTCTCTCATTCTCTACGACGCCGTTTCCAAGCGACCATTACCAACGCTTCCTCGAGCTTCCAAAGCTGCTCAGAGAGGTTTTGTGTTTTCTGAATGGCAACCGCACCGGCTCATGCTCCGGTGAAGTCGCAGCCTCTGCACAACTTCGCCCTCCCCTTCTTGAAATGGGGCGCCAGCGGCAAGAACAACACCACCACCACCGCCGCTCACCACCACCGCTTCCGCCGCCCCTCCGATCACGCCTCTGAACCCGACTCCTCCGACCCCGACTCCCGCCCCCACCGCCTCGGATCCAGAACCGCGCGCAACCGGTTCTCACTCCCTCTCAAACCACCTCCACCACCACCACCACAACTGCACGAAGCCGAACACGACGACGCAGACGACGCCGTGCAGAAGCCATGGAACCTGCGCCCTCGCAAGCCCGCGCTCCTCCCCAAGGCCGCACTCGAGATCGGCACCGGACCTTCCCGAAACCACCACCACGCCACCAACAACGGAGAATTCCACGACGGCGGCGGCGGCGGCGGCGACAACAACAACCCCGCACCGAAGTCGCTGCGGCTCCGCGGGTTCTCGGACACGCCGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATCGCTCTCTCCCGTGAAGAGATCGAAGAAGACATCTTCGTCATGACGGGCTCCAGGCCCGCTCGACGGCCCAGGAAGCGGCCCAAGAATGTCCAGAAACAAATGGATAGTGTGTTCCCTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCGCTGATACACCCGCCAAGAGGTGAAGAGAATTTAGGGAAGGTCTTGGAGATTGGAGGCTTAGGGTAGCAAGCTTGTAGTTAATTAGCCAAAATCATCGGTTCAATTTGGAGGCACTGCTTCTGCATGCTTACTCCCTAGCACCCGAAGGGGAAAGAGAACCCTGATGAGGTTGGAATTCACTGCAAGGGTTGCATGCTTTTGATGCCTTTCCTGTATGTATATTATGATTTCATATTGTTTATTGGTTTGATTCACACTTCTTTTGGTTTTTGCATGATGATCTTATTCATAATCATCAATGGGAAGAGGCTTTAAAAATAGTTTCAAATTTGTTTATTCTGATTATAAAATAACCTAAACCGAGCAAATGATAGTAGTTGGGGATAATCAAGCACTATAATATGAAAGAGTCATGTTAGTGCAATGGTCTGTATGCTAAGTGTTGTCTTTTTTGGGTTATTTGTTCGAATTGACACTGCAACGAACTTTTGCACCCTGGGTGGAAGAGGAAGACAACAGTGTGGTGTGGCCTCTTACTTGAAACTCAACACCATTGTGGATTCAAGTTGGATTAAAAATATTATGCTGTTTTCTCCAATGTGTTCTACATTGTTTATTTTCCAAGGGGTGTAAGGTCTCTCAAGTCTCAACTCCCAAACCACCAGCTTCTTGAGATTGATCTCAATAAGAATTTCAATTGTTTTGCCGTTATTTTAATTTTGTCTTTTTTTCAATCTTATTTGTCAAACTGCATGTTTCATGAATTCATGTACTCATTGATGGATATAATGACTAATGCCATATTCTATTTTACATGACAATGATCGGCATGAATGTTATCTTTATTTGCACATAAATAGTTTGTGTCCTTGGAATACATTTCTATTTTGTGGAAGACCTGAAGGGTCAAGATTCAGGATAGAGTCAGGTATTTGTGTCTTAAGTTGTTGCCGAAGAATCTATTTTACATATTTGTTCATTGTCATTTGCACTTGGGTAAATTTATTTTTTACTAACACTGCTCGGGATCCACTGATACAGCAAGGGTTTCCCTTTCAGGCTCCGGGTTTCAGTTGAAATTGAGCTAGTAAAAAAATTGCCCGTTGAGTGGACTTGATCATATGAGTTGTAGTGTAAAGATGCATGTTTTTTATTAGTCTTTTGTACATATTCCACTCCATGGGCTCTTTTTTTCAAAAAAAGAAGAAAGTTTGAGTGAACAGTACTGAATTGTAGTGTAAAGATGCATGTTTTTGGTGTGAAGGACAGATTCACCCAGATTCCGTGTGTTGCTTCTTTCGTTTTATTCTCGTGCGGAGGCTTTAATTTCACTTGTTATAATTTTTTTACCATTAAAAGGGTTTGGTTCTGAATATTTGTTTTTCTC

>Glyma17g15370.4   sequence type=transcript   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGACCATTACCAACGCTTCCTCGAGCTTCCAAAGCTGCTCAGAGAGGTTTTGTGTTTTCTGAATGGCAACCGCACCGGCTCATGCTCCGGTGAAGTCGCAGCCTCTGCACAACTTCGCCCTCCCCTTCTTGAAATGGGGCGCCAGCGGCAAGAACAACACCACCACCACCGCCGCTCACCACCACCGCTTCCGCCGCCCCTCCGATCACGCCTCTGAACCCGACTCCTCCGACCCCGACTCCCGCCCCCACCGCCTCGGATCCAGAACCGCGCGCAACCGGTTCTCACTCCCTCTCAAACCACCTCCACCACCACCACCACAACTGCACGAAGCCGAACACGACGACGCAGACGACGCCGTGCAGAAGCCATGGAACCTGCGCCCTCGCAAGCCCGCGCTCCTCCCCAAGGCCGCACTCGAGATCGGCACCGGACCTTCCCGAAACCACCACCACGCCACCAACAACGGAGAATTCCACGACGGCGGCGGCGGCGGCGGCGACAACAACAACCCCGCACCGAAGTCGCTGCGGCTCCGCGGGTTCTCGGACACGCCGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATCGCTCTCTCCCGTGAAGAGATCGAAGAAGACATCTTCGTCATGACGGGCTCCAGGCCCGCTCGACGGCCCAGGAAGCGGCCCAAGAATGTCCAGAAACAAATGGATAGTGTGTTCCCTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCGCTGATACACCCGCCAAGAGGTGAAGAGAATTTAGGGAAGGTCTTGGAGATTGGAGGTACAGAGGCGTGGGATTTTGTAAAGAGTAAAACGAAAATGTTGGATTGGAAATTTGGAATTTAGAAACGAACCATGATGATGATTATGAATTTATGATGATGATGATGATGATGCTAATTTCCTTGGTTGTGTTGTTTTTGCGGCACACTAGGGTTTTAGATGCAAGGGGCGGCTTTAGTTGATTTTTAGTAGTAGTAGTTTATATATCGCTGTAAGGAAAGGAAAATATATATCAAATCAGTATATATAGATTAATTAATAGACTTGAATGCGATGCTATGATAATCTTTTCAGTTCAAAGCTTTTTGTTGCTTTTTTTCTGATGCATCAAATGGTTTTCCATATTTGACAGGCTTAGGGTAGCAAGCTTGTAGTTAATTAGCCAAAATCATCGGTTCAATTTGGAGGCACTGCTTCTGCATGCTTACTCCCTAGCACCCGAAGGGGAAAGAGAACCCTGATGAGGTTGGAATTCACTGCAAGGGTTGCATGCTTTTGATGCCTTTCCTGTATGTATATTATGATTTCATATTGTTTATTGGTTTGATTCACACTTCTTTTGGTTTTTGCATGATGATCTTATTCATAATCATCAATGGGAAGAGGCTTTAAAAATAGTTTCAAATTTGTTTATTCTGATTATAAAATAACCTAAACCGAGCAAATGATAGTAGTTGGGGATAATCAAGCACTATAATATGAAAGAGTCATGTTAGTGCAATGGTCTGTATGCTAAGTGTTGTCTTTTTTGGGTTATTTGTTCGAATTGACACTGCAACGAACTTTTGCACCCTGGGTGGAAGAGGAAGACAACAGTGTGGTGTGGCCTCTTACTTGAAACTCAACACCATTGTGGATTCAAGTTGGATTAAAAATATTATGCTGTTTTCTCCAATGTGTTCTACATTGTTTATTTTCCAAGGGGTGTAAGGTCTCTCAAGTCTCAACTCCCAAACCACCAGCTTCTTGAGATTGATCTCAATAAGAATTTCAATTGTTTTGCCGTTATTTTAATTTTGTCTTTTTTTCAATCTTATTTGTCAAACTGCATGTTTCATGAATTCATGTACTCATTGATGGATATAATGACTAATGCCATATTCTATTTTACATGAC

Coding sequences of Glyma17g15370

Limit To All Plant Sequences

>Glyma17g15370.2   sequence type=CDS   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGCACCGGCTCATGCTCCGGTGAAGTCGCAGCCTCTGCACAACTTCGCCCTCCCCTTCTTGAAATGGGGCGCCAGCGGCAAGAACAACACCACCACCACCGCCGCTCACCACCACCGCTTCCGCCGCCCCTCCGATCACGCCTCTGAACCCGACTCCTCCGACCCCGACTCCCGCCCCCACCGCCTCGGATCCAGAACCGCGCGCAACCGGTTCTCACTCCCTCTCAAACCACCTCCACCACCACCACCACAACTGCACGAAGCCGAACACGACGACGCAGACGACGCCGTGCAGAAGCCATGGAACCTGCGCCCTCGCAAGCCCGCGCTCCTCCCCAAGGCCGCACTCGAGATCGGCACCGGACCTTCCCGAAACCACCACCACGCCACCAACAACGGAGAATTCCACGACGGCGGCGGCGGCGGCGGCGACAACAACAACCCCGCACCGAAGTCGCTGCGGCTCCGCGGGTTCTCGGACACGCCGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATCGCTCTCTCCCGTGAAGAGATCGAAGAAGACATCTTCGTCATGACGGGCTCCAGGCCCGCTCGACGGCCCAGGAAGCGGCCCAAGAATGTCCAGAAACAAATGGATAGTGTGTTCCCTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCGCTGATACACCCGCCAAGAGGTGA

>Glyma17g15370.3   sequence type=CDS   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGCACCGGCTCATGCTCCGGTGAAGTCGCAGCCTCTGCACAACTTCGCCCTCCCCTTCTTGAAATGGGGCGCCAGCGGCAAGAACAACACCACCACCACCGCCGCTCACCACCACCGCTTCCGCCGCCCCTCCGATCACGCCTCTGAACCCGACTCCTCCGACCCCGACTCCCGCCCCCACCGCCTCGGATCCAGAACCGCGCGCAACCGGTTCTCACTCCCTCTCAAACCACCTCCACCACCACCACCACAACTGCACGAAGCCGAACACGACGACGCAGACGACGCCGTGCAGAAGCCATGGAACCTGCGCCCTCGCAAGCCCGCGCTCCTCCCCAAGGCCGCACTCGAGATCGGCACCGGACCTTCCCGAAACCACCACCACGCCACCAACAACGGAGAATTCCACGACGGCGGCGGCGGCGGCGGCGACAACAACAACCCCGCACCGAAGTCGCTGCGGCTCCGCGGGTTCTCGGACACGCCGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATCGCTCTCTCCCGTGAAGAGATCGAAGAAGACATCTTCGTCATGACGGGCTCCAGGCCCGCTCGACGGCCCAGGAAGCGGCCCAAGAATGTCCAGAAACAAATGGATAGTGTGTTCCCTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCGCTGATACACCCGCCAAGAGGTGA

>Glyma17g15370.4   sequence type=CDS   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGCACCGGCTCATGCTCCGGTGAAGTCGCAGCCTCTGCACAACTTCGCCCTCCCCTTCTTGAAATGGGGCGCCAGCGGCAAGAACAACACCACCACCACCGCCGCTCACCACCACCGCTTCCGCCGCCCCTCCGATCACGCCTCTGAACCCGACTCCTCCGACCCCGACTCCCGCCCCCACCGCCTCGGATCCAGAACCGCGCGCAACCGGTTCTCACTCCCTCTCAAACCACCTCCACCACCACCACCACAACTGCACGAAGCCGAACACGACGACGCAGACGACGCCGTGCAGAAGCCATGGAACCTGCGCCCTCGCAAGCCCGCGCTCCTCCCCAAGGCCGCACTCGAGATCGGCACCGGACCTTCCCGAAACCACCACCACGCCACCAACAACGGAGAATTCCACGACGGCGGCGGCGGCGGCGGCGACAACAACAACCCCGCACCGAAGTCGCTGCGGCTCCGCGGGTTCTCGGACACGCCGTGCAGTGTGAAGAAAGAGAAGAGGAAATTCTGGATCGCTCTCTCCCGTGAAGAGATCGAAGAAGACATCTTCGTCATGACGGGCTCCAGGCCCGCTCGACGGCCCAGGAAGCGGCCCAAGAATGTCCAGAAACAAATGGATAGTGTGTTCCCTGGCTTATGGTTAGTAGGGATAACTGCGGATGCTTACAGAGTCGCTGATACACCCGCCAAGAGGTGA

Predicted protein sequences of Glyma17g15370

Limit To All Plant Sequences

>Glyma17g15370.2   sequence type=predicted peptide   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPAHAPVKSQPLHNFALPFLKWGASGKNNTTTTAAHHHRFRRPSDHASEPDSSDPDSRPHRLGSRTARNRFSLPLKPPPPPPPQLHEAEHDDADDAVQKPWNLRPRKPALLPKAALEIGTGPSRNHHHATNNGEFHDGGGGGGDNNNPAPKSLRLRGFSDTPCSVKKEKRKFWIALSREEIEEDIFVMTGSRPARRPRKRPKNVQKQMDSVFPGLWLVGITADAYRVADTPAKR*

>Glyma17g15370.3   sequence type=predicted peptide   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPAHAPVKSQPLHNFALPFLKWGASGKNNTTTTAAHHHRFRRPSDHASEPDSSDPDSRPHRLGSRTARNRFSLPLKPPPPPPPQLHEAEHDDADDAVQKPWNLRPRKPALLPKAALEIGTGPSRNHHHATNNGEFHDGGGGGGDNNNPAPKSLRLRGFSDTPCSVKKEKRKFWIALSREEIEEDIFVMTGSRPARRPRKRPKNVQKQMDSVFPGLWLVGITADAYRVADTPAKR*

>Glyma17g15370.4   sequence type=predicted peptide   gene model=Glyma17g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPAHAPVKSQPLHNFALPFLKWGASGKNNTTTTAAHHHRFRRPSDHASEPDSSDPDSRPHRLGSRTARNRFSLPLKPPPPPPPQLHEAEHDDADDAVQKPWNLRPRKPALLPKAALEIGTGPSRNHHHATNNGEFHDGGGGGGDNNNPAPKSLRLRGFSDTPCSVKKEKRKFWIALSREEIEEDIFVMTGSRPARRPRKRPKNVQKQMDSVFPGLWLVGITADAYRVADTPAKR*

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