SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47430 | AT | Annotation by Michelle Graham. TAIR10: DWNN domain, a CCHC-type zinc finger | chr5:19235819-19240596 REVERSE LENGTH=892 | SoyBase | E_val: 0 | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0314 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR15439 | Panther | RETINOBLASTOMA-BINDING PROTEIN 6 | JGI | ISS | |
| PF08783 | PFAM | DWNN domain | JGI | ISS | |
| UniRef100_G7JHR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Retinoblastoma-binding protein n=1 Tax=Medicago truncatula RepID=G7JHR9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MV29 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MV29_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g15240 not represented in the dataset |
Glyma17g15240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g04880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g143300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g15240.2 sequence type=transcript gene model=Glyma17g15240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAGACATTATTTCTATCTAGGTTTGTCTGCGAATTCCCCAAAACATCCAATCCCAAACCATCATCTTTCTTTCTTCTTTTTCTCACTCCCACCTCTCTTTTTTCTCTCACCCCCAATCCCAAACCCAAACCCTAGCTAGCTTCACCATGCGGTTCCAATCGCTCTAACCCTATCTCCTTTTCTCCACCAACGATCTTCGATCCGCATCGCCGTTCATTCGAATCGTCTCAGATTCTCCGCTGCTTCCACCACCACCACAAGGAGGAGGAGTTCCTCGCGATTCCCGCTTGAAGCTTTTCCGTCGCCGCCGACGATCGAAGAGATTCGCTCCGATTCCCAACGCGCCGTCGTCGAGGTTTTCACCGAAGGAACAAATCCTGTTGTTCCTCTTCTTCGATTCGATTGGATTGCACTGTTTTGCCCTAACTGTTGCCGCGACTTCTTCGGATTTCTGGTTTGAGAGGGCTTTTCTGCGCTTGATTCGAATTCGTCGGATTCTCATCCTCGATCGTTTGATAACGATCCTATTGCTCTGATTTCGAAAGTCTCTGGAAGGAATATCAATTTTCTCAGGATTCGGATTGCGCTCTGGTTTTTGCGAGGAAGTGAAGAAGATTCGGCATCAGGTTGCTCGTGAAGAATTCTGGAAGTGAAATCTCGCCGTCGTGGTGGTTCGATTTGTTCGATCTTAACTTTCGTAATCTGCAAGTTGAGGGAGAAAAAAAATCAGAAAAAGTAAAGAGAAGAGAAAGAAAAAGAGATTTGATATATTGTACTGTGTGATTTTTTTTTTTTTTAGTTTTAATAACAGGGGCCCTTTTTTGATATTATTTCAGAGGCCCTTTGGTTATTATCATCATCATCGTCCTTTGTTATTATTGGTTCTAAGATTAAAAAAATCTTTTTCTATAGATAGAAAGAGAAATATACCATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCTGTTGGTACTTTGAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAACGCCCAGACCAATGAAGAATATCTTGATGAAGAAATGTTGATTCCTAAAAATACCTCAGTGTTAATTCGTCGGGTTCCAGGACGGCCACGTTTACCAATTGTTACTGAAATAGAACAAAAGGTGGAAAATAAGGTGGTGGAATCTGAACCTGAAAACAGAAGCTTACCAGCTGAAGATCCATCTGCCATGAAATATCCTGAAGATTCAGACTGGGATGAATTTGGCAATGATTTGTATTCAATTCCTGATCAAGTGCCTGTTCAATCAAGCAACTTAATTCCAGAGGCTCCTCCTCCCAACAAAGCTGATGAAGACAGTAAGATTAAAGCCTTTGTTGATACTCCAGCCTTGGATTGGCAACGTCAAGGTTCAGATTTTGGCACTGGTAGAGGCTTTGGAAGGGGTACAGGGGGACGGATGGGTGGTGGACGTGGTTTTGGGATGGAGCGAAAAACACCTCCACAAGGCTATGTATGCCACAGATGCAAGGTGCCTGGACATTTTATTCAGCACTGTCCTACAAATGGTGACCCGAATTATGACATGAGAAAAGTCAAGCAACCTACTGGTATTCCAAGATCCATGCTGATGGTAAATCCACAAGGTTCCTATGCTTTACCTAATGGTTCAGTAGCTGTCTTGAAGCCAAATGAGGCTGCTTTTGAGAAAGAAATAGAAGGGATGCCATCAACACGTTCTGTTGGGGAACTACCACCCGAGCTCCGCTGTCCCTTATGTAATGATGTTATGAAAGATGCTGTACTGACAAGCAAGTGTTGCTTTAAAAGCTTTTGTGACAGATGTATTAGGGACTATATTATCTCCAAGTCTATCTGTGTATGTGGTGCAACAAATATTCTTGCAGATGATCTCTTACCAAATAAGACATTACGAGATACCATCAATCGTATATTGGAGTCAGGCAATAGCAGTGCTGAAAATGCTGGGAGCACTTTCCAAGCTCAAGATATGGAGTCTGCTCGCTGTCCGCAGCCTAAGATTCCATCCCCAACCTCATCTGCTGCGTCCAAGGGAGATCTAAAGGTTTCATCTGTTAATGAAAAAACAACAAATATACAGGAAACAGCAGATGATAGAAAGGCTGTTTCTGCTCCACAGCAGACATCAGAGCAAGTAAGGAACCCCAGAGCTGCTGATATATCCGAAGCTACTCACGAGTCTATGAGTGTGAAGGAACCAGCCTCACAAGGGAGTGCTCAGCAGGTTGAGGAAGAAGTGCAGCAAAAGTTGGTTCCTACTGAGGCTGGAAAGAAAAAGAAAAAGAAGAAAGTTCGTTTGCCCCCAAATGATTTGCAGTGGAAAACCCCACATGACTTTGGGGCTGAGAACTATATGATGAATAATATGATGCCAATGGTTCCACCTCCTGGCTATAATTCGTACTGGAATGGCATGCAACCTATGGATGGATTTATGGCACCGTATGGTAATCCAATGCAAATGATGGGTTATGGTCTGGGCCCCTTGGACATGCCATTTGGTGGTATGCCACAAGACCCATTTGGCATGCAAGGTTACATGATGCCTGGTTTCCCGCCTCATAGGGATCTTGCTGACTTCAGTATGGGAATGAATGTTCCACCTCCTGTAATGAGTAGAGAGGAGTTTGAAGCCCGGAAAGCTGATATGAGGAGGAAGCGTGAAAATGATAGACGTCCTGAAAGGGACTTCTCTAAAGATCGAGACTTTGGTAGGGAAGTGAGCAGTGTTGGGGATGTTTCTTCAATGAAATCAAAAACTGTATGTGCTTTTTATTGTTTTAATTTTGCTCTCTTTTTCCTTGGACTTTATGTGCCATTCACTTTTTTGGGTTTTTCTACCGGAACTTTGGCCAGAAACCTCAAGCCTGCAAAAGAGCACTGATTGAACAAGATAATCCCACCTGTTATTTATGTTCCTTAAATCATAGTAATCTTTGGCAGTT
>Glyma17g15240.1 sequence type=CDS gene model=Glyma17g15240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCTGTTGGTACTTTGAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAACGCCCAGACCAATGAAGAATATCTTGATGAAGAAATGTTGATTCCTAAAAATACCTCAGTGTTAATTCGTCGGGTTCCAGGACGGCCACGTTTACCAATTGTTACTGAAATAGAACAAAAGGTGGAAAATAAGGTGGTGGAATCTGAACCTGAAAACAGAAGCTTACCAGCTGAAGATCCATCTGCCATGAAATATCCTGAAGATTCAGACTGGGATGAATTTGGCAATGATTTGTATTCAATTCCTGATCAAGTGCCTGTTCAATCAAGCAACTTAATTCCAGAGGCTCCTCCTCCCAACAAAGCTGATGAAGACAGTAAGATTAAAGCCTTTGTTGATACTCCAGCCTTGGATTGGCAACGTCAAGGTTCAGATTTTGGCACTGGTAGAGGCTTTGGAAGGGGTACAGGGGGACGGATGGGTGGTGGACGTGGTTTTGGGATGGAGCGAAAAACACCTCCACAAGGCTATGTATGCCACAGATGCAAGGTGCCTGGACATTTTATTCAGCACTGTCCTACAAATGGTGACCCGAATTATGACATGAGAAAAGTCAAGCAACCTACTGGTATTCCAAGATCCATGCTGATGGTAAATCCACAAGGTTCCTATGCTTTACCTAATGGTTCAGTAGCTGTCTTGAAGCCAAATGAGGCTGCTTTTGAGAAAGAAATAGAAGGGATGCCATCAACACGTTCTGTTGGGGAACTACCACCCGAGCTCCGCTGTCCCTTATGTAATGATGTTATGAAAGATGCTGTACTGACAAGCAAGTGTTGCTTTAAAAGCTTTTGTGACAGATGTATTAGGGACTATATTATCTCCAAGTCTATCTGTGTATGTGGTGCAACAAATATTCTTGCAGATGATCTCTTACCAAATAAGACATTACGAGATACCATCAATCGTATATTGGAGTCAGGCAATAGCAGTGCTGAAAATGCTGGGAGCACTTTCCAAGCTCAAGATATGGAGTCTGCTCGCTGTCCGCAGCCTAAGATTCCATCCCCAACCTCATCTGCTGCGTCCAAGGGAGATCTAAAGGTTTCATCTGTTAATGAAAAAACAACAAATATACAGGAAACAGCAGATGATAGAAAGGCTGTTTCTGCTCCACAGCAGACATCAGAGCAAGTAAGGAACCCCAGAGCTGCTGATATATCCGAAGCTACTCACGAGTCTATGAGTGTGAAGGAACCAGCCTCACAAGGGAGTGCTCAGCAGGTTGAGGAAGAAGTGCAGCAAAAGTTGGTTCCTACTGAGGCTGGAAAGAAAAAGAAAAAGAAGAAAGTTCGTTTGCCCCCAAATGATTTGCAGTGGAAAACCCCACATGACTTTGGGGCTGAGAACTATATGATGAATAATATGATGCCAATGGTTCCACCTCCTGGCTATAATTCGTACTGGAATGGCATGCAACCTATGGATGGATTTATGGCACCGTATGGTAATCCAATGCAAATGATGGGTTATGGTCTGGGCCCCTTGGACATGCCATTTGGTGGTATGCCACAAGACCCATTTGGCATGCAAGGTTACATGATGCCTGGTTTCCCGCCTCATAGGGATCTTGCTGACTTCAGTATGGGAATGAATGTTCCACCTCCTGTAATGAGTAGAGAGGAGTTTGAAGCCCGGAAAGCTGATATGAGGAGGAAGCGTGAAAATGATAGACGTCCTGAAAGGGACTTCTCTAAAGATCGAGACTTTGGTAGGGAAGTGAGCAGTGTTGGGGATGTTTCTTCAATGAAATCAAAAACTAGGTCAATTCCACCGTCCTCGGGTAGCGATTACCATCAGCCCCGTTTCCGTTCAGAGCGACACTCACCTGATAGGTCTCCGCGCGATGTGGAACCTCCACCTCCACGCCCAACCAAGAGAAAGTTAGAGCACCACTCCGATCGCGAACGCGAAGACAGGGATCGCGACTATGAGCACGAGCGCCACCACCGCCGTCACCGATCGGAATCCTCATCCAGAAGGTCATCGGAACCAGTCGCCAAACCTTCATCCAATGCCGCTGCTGCTGCTGCTGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGCGGATCGCAAGCAGAAGGCCAGCGTGTTCTCCCGCATAAGCTTTCCTGCTGAAGAGGAACCTCCTAAGAAGAGAAAAGTCACCGCTTCTTCCACAACGGAACCAGCCGCTACCGCCGCCGCACCCAGTGCCTCTTCGGCACACCTAAAGACAGTGTCGAACGGTTACTACGAAGGGAGGAAGAGTAGCGGCGTGGCGGACTACGAATCCAGTGACGACGAGCGGCACTTTAAACGGAGGCCGTCGAGGTACGAGCCGTCGCCTCCGCCGCAGCCGGCGGAGTGGGAGGAGGAAGGGAGGCATTCGAGAGGAACGAGGGAGCGCAAGCATAGGTGA >Glyma17g15240.2 sequence type=CDS gene model=Glyma17g15240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCTGTTGGTACTTTGAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAACGCCCAGACCAATGAAGAATATCTTGATGAAGAAATGTTGATTCCTAAAAATACCTCAGTGTTAATTCGTCGGGTTCCAGGACGGCCACGTTTACCAATTGTTACTGAAATAGAACAAAAGGTGGAAAATAAGGTGGTGGAATCTGAACCTGAAAACAGAAGCTTACCAGCTGAAGATCCATCTGCCATGAAATATCCTGAAGATTCAGACTGGGATGAATTTGGCAATGATTTGTATTCAATTCCTGATCAAGTGCCTGTTCAATCAAGCAACTTAATTCCAGAGGCTCCTCCTCCCAACAAAGCTGATGAAGACAGTAAGATTAAAGCCTTTGTTGATACTCCAGCCTTGGATTGGCAACGTCAAGGTTCAGATTTTGGCACTGGTAGAGGCTTTGGAAGGGGTACAGGGGGACGGATGGGTGGTGGACGTGGTTTTGGGATGGAGCGAAAAACACCTCCACAAGGCTATGTATGCCACAGATGCAAGGTGCCTGGACATTTTATTCAGCACTGTCCTACAAATGGTGACCCGAATTATGACATGAGAAAAGTCAAGCAACCTACTGGTATTCCAAGATCCATGCTGATGGTAAATCCACAAGGTTCCTATGCTTTACCTAATGGTTCAGTAGCTGTCTTGAAGCCAAATGAGGCTGCTTTTGAGAAAGAAATAGAAGGGATGCCATCAACACGTTCTGTTGGGGAACTACCACCCGAGCTCCGCTGTCCCTTATGTAATGATGTTATGAAAGATGCTGTACTGACAAGCAAGTGTTGCTTTAAAAGCTTTTGTGACAGATGTATTAGGGACTATATTATCTCCAAGTCTATCTGTGTATGTGGTGCAACAAATATTCTTGCAGATGATCTCTTACCAAATAAGACATTACGAGATACCATCAATCGTATATTGGAGTCAGGCAATAGCAGTGCTGAAAATGCTGGGAGCACTTTCCAAGCTCAAGATATGGAGTCTGCTCGCTGTCCGCAGCCTAAGATTCCATCCCCAACCTCATCTGCTGCGTCCAAGGGAGATCTAAAGGTTTCATCTGTTAATGAAAAAACAACAAATATACAGGAAACAGCAGATGATAGAAAGGCTGTTTCTGCTCCACAGCAGACATCAGAGCAAGTAAGGAACCCCAGAGCTGCTGATATATCCGAAGCTACTCACGAGTCTATGAGTGTGAAGGAACCAGCCTCACAAGGGAGTGCTCAGCAGGTTGAGGAAGAAGTGCAGCAAAAGTTGGTTCCTACTGAGGCTGGAAAGAAAAAGAAAAAGAAGAAAGTTCGTTTGCCCCCAAATGATTTGCAGTGGAAAACCCCACATGACTTTGGGGCTGAGAACTATATGATGAATAATATGATGCCAATGGTTCCACCTCCTGGCTATAATTCGTACTGGAATGGCATGCAACCTATGGATGGATTTATGGCACCGTATGGTAATCCAATGCAAATGATGGGTTATGGTCTGGGCCCCTTGGACATGCCATTTGGTGGTATGCCACAAGACCCATTTGGCATGCAAGGTTACATGATGCCTGGTTTCCCGCCTCATAGGGATCTTGCTGACTTCAGTATGGGAATGAATGTTCCACCTCCTGTAATGAGTAGAGAGGAGTTTGAAGCCCGGAAAGCTGATATGAGGAGGAAGCGTGAAAATGATAGACGTCCTGAAAGGGACTTCTCTAAAGATCGAGACTTTGGTAGGGAAGTGAGCAGTGTTGGGGATGTTTCTTCAATGAAATCAAAAACTGTATGTGCTTTTTATTGTTTTAATTTTGCTCTCTTTTTCCTTGGACTTTATGTGCCATTCACTTTTTTGGGTTTTTCTACCGGAACTTTGGCCAGAAACCTCAAGCCTGCAAAAGAGCACTGA
>Glyma17g15240.1 sequence type=predicted peptide gene model=Glyma17g15240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEEMLIPKNTSVLIRRVPGRPRLPIVTEIEQKVENKVVESEPENRSLPAEDPSAMKYPEDSDWDEFGNDLYSIPDQVPVQSSNLIPEAPPPNKADEDSKIKAFVDTPALDWQRQGSDFGTGRGFGRGTGGRMGGGRGFGMERKTPPQGYVCHRCKVPGHFIQHCPTNGDPNYDMRKVKQPTGIPRSMLMVNPQGSYALPNGSVAVLKPNEAAFEKEIEGMPSTRSVGELPPELRCPLCNDVMKDAVLTSKCCFKSFCDRCIRDYIISKSICVCGATNILADDLLPNKTLRDTINRILESGNSSAENAGSTFQAQDMESARCPQPKIPSPTSSAASKGDLKVSSVNEKTTNIQETADDRKAVSAPQQTSEQVRNPRAADISEATHESMSVKEPASQGSAQQVEEEVQQKLVPTEAGKKKKKKKVRLPPNDLQWKTPHDFGAENYMMNNMMPMVPPPGYNSYWNGMQPMDGFMAPYGNPMQMMGYGLGPLDMPFGGMPQDPFGMQGYMMPGFPPHRDLADFSMGMNVPPPVMSREEFEARKADMRRKRENDRRPERDFSKDRDFGREVSSVGDVSSMKSKTRSIPPSSGSDYHQPRFRSERHSPDRSPRDVEPPPPRPTKRKLEHHSDREREDRDRDYEHERHHRRHRSESSSRRSSEPVAKPSSNAAAAAAAAAAAAAAAAADRKQKASVFSRISFPAEEEPPKKRKVTASSTTEPAATAAAPSASSAHLKTVSNGYYEGRKSSGVADYESSDDERHFKRRPSRYEPSPPPQPAEWEEEGRHSRGTRERKHR* >Glyma17g15240.2 sequence type=predicted peptide gene model=Glyma17g15240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEEMLIPKNTSVLIRRVPGRPRLPIVTEIEQKVENKVVESEPENRSLPAEDPSAMKYPEDSDWDEFGNDLYSIPDQVPVQSSNLIPEAPPPNKADEDSKIKAFVDTPALDWQRQGSDFGTGRGFGRGTGGRMGGGRGFGMERKTPPQGYVCHRCKVPGHFIQHCPTNGDPNYDMRKVKQPTGIPRSMLMVNPQGSYALPNGSVAVLKPNEAAFEKEIEGMPSTRSVGELPPELRCPLCNDVMKDAVLTSKCCFKSFCDRCIRDYIISKSICVCGATNILADDLLPNKTLRDTINRILESGNSSAENAGSTFQAQDMESARCPQPKIPSPTSSAASKGDLKVSSVNEKTTNIQETADDRKAVSAPQQTSEQVRNPRAADISEATHESMSVKEPASQGSAQQVEEEVQQKLVPTEAGKKKKKKKVRLPPNDLQWKTPHDFGAENYMMNNMMPMVPPPGYNSYWNGMQPMDGFMAPYGNPMQMMGYGLGPLDMPFGGMPQDPFGMQGYMMPGFPPHRDLADFSMGMNVPPPVMSREEFEARKADMRRKRENDRRPERDFSKDRDFGREVSSVGDVSSMKSKTVCAFYCFNFALFFLGLYVPFTFLGFSTGTLARNLKPAKEH*
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