Glyma17g15140 - SoyBase

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Report for Sequence Feature Glyma17g15140

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11839142
stop:	11840782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g15140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60580	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr3:22394007-22394873 FORWARD LENGTH=288	SoyBase	E_val: 3.00E-44	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11389	Panther	ZINC FINGER PROTEIN	JGI		ISS
PTHR11389:SF378	Panther	gb def: gastrula zinc finger protein xlcgf46.1	JGI		ISS
UniRef100_I1MV17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MV17_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4U315	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cys2/His2 zinc-finger transcription factor n=1 Tax=Silene latifolia RepID=Q4U315_SILLA	SoyBase	E_val: 1.00E-61	ISS

Expression Patterns of Glyma17g15140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g15140

Paralog	Evidence	Comments
Glyma05g04690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g15140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g142300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g15140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g15140

Limit To All Plant Sequences

>Glyma17g15140.1   sequence type=CDS   gene model=Glyma17g15140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTTGGTGGGCACATGAAGGCTCACCTTGCTTCTCTCCCTCTCCCTCTCCCTCCAAAGCTTCACTCTTGTTTCTCTTCCTCTGACTCAGAACAAGAACAATCTTTAAGGGAGAATCCTAAGAAAACCTTGAGGATTCTGGATCCTGAAGACAGAGAGAGCGAGACAGAGTCTAATAAGAACCCGACTCGTCAACGATCCAAGCGCAACTGGAAATCTACCATGCCCAAGCTCAGCCTCGGACACCCCGAAGCCGAACCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACCTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGGAACACAAACTCGCCAATGCAGGTCCACCCAAGACTCGCTGCAGCAGCGGATCAGAGATCAAGCTCAAGAACAAAGTCCGCTCCAAGCACCTCTGCCACGCTTGTCACAAATCCTTTCGATCCTCTCGCGCTCTTGGGAGCCACAGAACCCTGTGCTCTCCCCGTCAGGAAGCCCAAAATAACAGCATCATTAGTAATAACAACATTAAGGTTTTTGAATGCCCCTTCTGTTACAAGCTGTTTGGTTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCTTCCTCTTCAACCGTTAATCATTCTGTCAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCTGCTCCGGCCGAAGACGACGATCTTAGCGTTGTTTCTGATGCCTAA

Predicted protein sequences of Glyma17g15140

Limit To All Plant Sequences

>Glyma17g15140.1   sequence type=predicted peptide   gene model=Glyma17g15140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLPLPPKLHSCFSSSDSEQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSRALGSHRTLCSPRQEAQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRSHLIPSSSSTVNHSVKLKQSFIDLNLPAPAEDDDLSVVSDA*

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