SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13200 | AT | Annotation by Michelle Graham. TAIR10: Cwf15 / Cwc15 cell cycle control family protein | chr3:4242239-4243976 FORWARD LENGTH=230 | SoyBase | E_val: 3.00E-99 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005681 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spliceosomal complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3228 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12718 | Panther | CELL CYCLE CONTROL PROTEIN CWF15 | JGI | ISS | |
| PF04889 | PFAM | Cwf15/Cwc15 cell cycle control protein | JGI | ISS | |
| UniRef100_G7JIW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CWC15-like protein n=1 Tax=Medicago truncatula RepID=G7JIW9_MEDTR | SoyBase | E_val: 9.00E-133 | ISS |
| UniRef100_I1MV08 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MV08_SOYBN | SoyBase | E_val: 6.00E-164 | ISS |
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Glyma17g15050 not represented in the dataset |
Glyma17g15050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g04621 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g141500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g15050.2 sequence type=transcript gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACAGGCGCGCCCGCCACAGTTTGGAATGAATAAGCCCACTTAGTTAAAAAGCCCACATATAAACTTTCATTAAGCGCTTCTGGCACTCTCTCTCTCTAATCTCTTTCACCGAAACCCTTCTTCCATTACCGGCGAACGAAATCGGTGACAGAAAAGCAACAAGCAATCTCGATCCCCAAATCGTGAAATCCGATGACGACCGCTGCAAGACCCACATGGGCACCTGCTAAAGGTGGCAACGAACAAGGTGGTACTCGAATTTTCGGTCCCTCACAAAAGTACTCTTCTAGGGACATCGCATCGCACACCACTCTCAAGCCCAGGAAGGAAGGGCAGGACACACAGGATGAATTAAAGAGAAGAAACCTACGTGATGAACTGGAAGATCGTGAAAGGAGGCATTTCTCATCAAAAAATAAATCTTATGGTAAAGTTATCAGTGTTTAACGTTTCTCTATATTTCTATTTGTAGCATTTGAATTGCATCATTCTTGTCAGATGGATATTTTTTCCCTGTTTTTAATTGTAATTTGTAACTGTTCAATTCTATTCTATTTTTTGGCAGATGACAGGGATCATGGAAAGGGTAGCCATCTGTTTTTGGAAGGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAGTGATGATGACGAGGATGACGAGGATGATACTGAAGCATTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGAACAGAGGAAAAGCTACGCAAGGAACGACAACAACAAGAGGAGGAGCTCAAAGTAAAGGAGGCAGAGCTTCTGCGCGGAAACCCACTGCTAAATAATCCAACAGCATCTTTCAATGTGAAAAGAAGGTGGGATGATGATGTGGTGTTTAAGAACCAAGCCCGTGGTGAAACCAAAACAGCTAAGCGATTCATTAATGACACCATCAGGAATGATTTCCATAGAAAATTCCTGCAAAAATACATGAAGTAAGTCCTTGTGCCAGAAGTCTGAGTTGTTTGGACTTTGGACTCAACAGAACTTATTAATTTGCAGTTTGTATCTAAATGTATGATTCAATGTTGATGGATATATTGTTTCCTCTTATAACGCTTTTTAACATGCTAATCATAGTTGCTGTAACATGGTGTATGCTTGTTAATGCCAACTGGGTTTAAGAGTCAGACCTTAAAATAACATTCAGTGAGGTTGTCTCTCTCTCACCCTATACTATTCGCTGTTCTATAATTCTATTCACTCGTTGGATCAATCATTTAATTGGCCTGGTATGG >Glyma17g15050.3 sequence type=transcript gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTATCTCCTAACTAAAATACTTTGCAATGGCCTTCCATCTAAAAGAGGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAGTGATGATGACGAGGATGACGAGGATGATACTGAAGCATTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGAACAGAGGAAAAGCTACGCAAGGAACGACAACAACAAGAGGAGGAGCTCAAAGTAAAGGAGGCAGAGCTTCTGCGCGGAAACCCACTGCTAAATAATCCAACAGCATCTTTCAATGTGAAAAGAAGGTGGGATGATGATGTGGTGTTTAAGAACCAAGCCCGTGGTGAAACCAAAACAGCTAAGCGATTCATTAATGACACCATCAGGAATGATTTCCATAGAAAATTCCTGCAAAAATACATGAAGTAAGTCCTTGTGCCAGAAGTCTGAGTTGTTTGGACTTTGGACTCAACAGAACTTATTAATTTGCAGTTTGTATCTAAATGTATGATTCAATGTTGATGGATATATTGTTTCCTCTTATAACGCTTTTTAACATGCTAATCATAGTTGCTGTAACATGGTGTATGCTTGTTAATGCCAACTGGGTTTAAGAGTCAGACCTTAAAATAACATTCAGTGAGGTTGTCTCTCTCTCACCCTATACTATTCGCTGTTCTATAATTCTATTCACTCGTTGGATCAATCATTTAATTGGCCTGGTATGG
>Glyma17g15050.1 sequence type=CDS gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACCGCTGCAAGACCCACATGGGCACCTGCTAAAGGTGGCAACGAACAAGGTGGTACTCGAATTTTCGGTCCCTCACAAAAGTACTCTTCTAGGGACATCGCATCGCACACCACTCTCAAGCCCAGGAAGGAAGGGCAGGACACACAGGATGAATTAAAGAGAAGAAACCTACGTGATGAACTGGAAGATCGTGAAAGGAGGCATTTCTCATCAAAAAATAAATCTTATGATGACAGGGATCATGGAAAGGGTAGCCATCTGTTTTTGGAAGGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAGTGATGATGACGAGGATGACGAGGATGATACTGAAGCATTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGAACAGAGGAAAAGCTACGCAAGGAACGACAACAACAAGAGGAGGAGCTCAAAGTAAAGGAGGCAGAGCTTCTGCGCGGAAACCCACTGCTAAATAATCCAACAGCATCTTTCAATGTGAAAAGAAGGTGGGATGATGATGTGGTGTTTAAGAACCAAGCCCGTGGTGAAACCAAAACAGCTAAGCGATTCATTAATGACACCATCAGGAATGATTTCCATAGAAAATTCCTGCAAAAATACATGAAGTAA >Glyma17g15050.2 sequence type=CDS gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATTTTTTCCCTGTTTTTAATTGTAATTTGTAACTGTTCAATTCTATTCTATTTTTTGGCAGATGACAGGGATCATGGAAAGGGTAGCCATCTGTTTTTGGAAGGATCGAAGAGAGAAATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAGTGATGATGACGAGGATGACGAGGATGATACTGAAGCATTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGAACAGAGGAAAAGCTACGCAAGGAACGACAACAACAAGAGGAGGAGCTCAAAGTAAAGGAGGCAGAGCTTCTGCGCGGAAACCCACTGCTAAATAATCCAACAGCATCTTTCAATGTGAAAAGAAGGTGGGATGATGATGTGGTGTTTAAGAACCAAGCCCGTGGTGAAACCAAAACAGCTAAGCGATTCATTAATGACACCATCAGGAATGATTTCCATAGAAAATTCCTGCAAAAATACATGAAGTAA >Glyma17g15050.3 sequence type=CDS gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGATCACATTGTTCCACGTAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGATGACAGTGATGATGACGAGGATGACGAGGATGATACTGAAGCATTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGAACAGAGGAAAAGCTACGCAAGGAACGACAACAACAAGAGGAGGAGCTCAAAGTAAAGGAGGCAGAGCTTCTGCGCGGAAACCCACTGCTAAATAATCCAACAGCATCTTTCAATGTGAAAAGAAGGTGGGATGATGATGTGGTGTTTAAGAACCAAGCCCGTGGTGAAACCAAAACAGCTAAGCGATTCATTAATGACACCATCAGGAATGATTTCCATAGAAAATTCCTGCAAAAATACATGAAGTAA
>Glyma17g15050.1 sequence type=predicted peptide gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKEGQDTQDELKRRNLRDELEDRERRHFSSKNKSYDDRDHGKGSHLFLEGSKREMEDHIVPRSVDADDSDVEVKSDDDSDDDEDDEDDTEALLAELEQIKKERTEEKLRKERQQQEEELKVKEAELLRGNPLLNNPTASFNVKRRWDDDVVFKNQARGETKTAKRFINDTIRNDFHRKFLQKYMK* >Glyma17g15050.2 sequence type=predicted peptide gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIFSLFLIVICNCSILFYFLADDRDHGKGSHLFLEGSKREMEDHIVPRSVDADDSDVEVKSDDDSDDDEDDEDDTEALLAELEQIKKERTEEKLRKERQQQEEELKVKEAELLRGNPLLNNPTASFNVKRRWDDDVVFKNQARGETKTAKRFINDTIRNDFHRKFLQKYMK* >Glyma17g15050.3 sequence type=predicted peptide gene model=Glyma17g15050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDHIVPRSVDADDSDVEVKSDDDSDDDEDDEDDTEALLAELEQIKKERTEEKLRKERQQQEEELKVKEAELLRGNPLLNNPTASFNVKRRWDDDVVFKNQARGETKTAKRFINDTIRNDFHRKFLQKYMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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