SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12420 | AT | Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1263 | KOG | Multicopper oxidases | JGI | ISS | |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | ISS | |
| PTHR11709:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00394 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07731 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07732 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_G7JK45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Monocopper oxidase-like protein SKU5 n=2 Tax=Medicago truncatula RepID=G7JK45_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUX7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUX7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g14730 not represented in the dataset |
Glyma17g14730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g04270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g138300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g14730.1 sequence type=CDS gene model=Glyma17g14730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCTTTTAGAGCTCTCTTCTTCTTCTTTCTCATCAACGTCTCCTTGCTCCTCACACTCTCTTCTGCGGCGGATCCATTCGTTTCATACGAATTTGAAGTCTCTTACATCACTGCATCCCCTCTTGGAGTTCCTCAGCAGGTCATTGCTATCAACAACAAGTTCCCAGGTCCTATTATCAATGTTACTACAAACAACAACGTTGCTGTCAATGTTCGGAACAAGTTGGATGAGAGCCTCCTCATTCATTGGTCTGGGATTCAGCAAAGGAGGAGTTCGTGGCAAGATGGTGTTCTTGGCACAAACTGTCCTATTCCTGCAAAGTGGAACTGGACTTACCAGTTTCAGGTGAAGGATCAAATTGGAAGCTTTTTCTACTTCCCTTCCCTTCATCTTCAGAGAGCTGCTGGTGGATTTGGGGGTTTCATTATAAACAACAGAGCCATCATTCCTATTCCTTTTGATACCCCACATGGGGACATTGTTGTTTTTATTGGAGATTGGTACACCCGCAATCATACGGATTTGAGGAAGGCCCTTGATGATGGAAAAGATCTTGGCATGCCGGATGGTGTTCTCATCAACGGGAAAGGCCCTTACCGATATAACAACACACTTGTTCCTGATGGCATTGATTATGAAACCATTGAAGTTCATCCTGGAAAAACTTACCGACTTCGTGTACATAATGTTGGAGTATCAACAAGTCTGAATTTCAGGATCCAGAGTCATAACTTACTTCTAGCAGAGACAGAGGGGTCTTACACAGTGCAACAGAACTACACTAGCTTAGATATTCATGTTGGACAATCTTATTCTTTTCTGTTAAGCACGGATCAAAATGCAAGTACAGATTACTACATTGTAGCAAGTGCCAGGTTTGTGAATGAATCACGTTGGCAAAGAGTTACTGGAGTTGCTATCTTGCGCTATACAAATTCCAAGGGGAAGGCACGTGGTCCTCTCCCACCTGCTCCTGATGATCAATTTGACAAAACTTACTCAATGAACCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCTCGTCCTAACCCACAAGGGTCTTTCAGATATGGTTCCATCAATGTGACTGATATTTATGTATTGAAAAATAAGCCACTGGAGAAAATCAATGGGAAGCGGCGAGCAACACTCAGTGGAAACTCTTTTGTCAATCCTTCTACTCCAATCAGGCTTGCTGACCAGTACAAATTAAAGGGAGTATACAAGCTTGATTTCCCTACCAAGCCTCTTACAGGATCACCTCGCACAGAAACATCAGTCATTAATGGAACTTATAGGGGATTTATGGAAATTATACTGCAGAACAATGATACTAAGATGCATACCTATCACATGAGTGGATATGCATTTTTTGTTGTCGGGATGGATTTTGGTGATTGGTCTGAGAATAGCAGGGGTACATATAACAAGTGGGATGGAATAGCTCGCACTACAGCACAGGTCTATCCCGGAGCATGGACAGCAATTTTGGTTTCCCTTGACAACGTAGGAGTTTGGAATCTCAGAACAGAAAACCTTGATTCATGGTATCTTGGTCAAGAAACATATGTCAGGGTTGTCAACCCAGAGGTCAATAACAAGACTGAGTTGCCCATTCCAGACAATGCCCTTTTCTGTGGTGCCCTTAGCAAATTGCAGAAGCCTCAAAAGGTTTCTTCAGATGCACCATCAATCAGTCGGAACAAACTGAAGCTGTTCTTCACTTGGCTCATTGTATTCGCCTGGATCCACATTTTCCAGTAA
>Glyma17g14730.1 sequence type=predicted peptide gene model=Glyma17g14730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFRALFFFFLINVSLLLTLSSAADPFVSYEFEVSYITASPLGVPQQVIAINNKFPGPIINVTTNNNVAVNVRNKLDESLLIHWSGIQQRRSSWQDGVLGTNCPIPAKWNWTYQFQVKDQIGSFFYFPSLHLQRAAGGFGGFIINNRAIIPIPFDTPHGDIVVFIGDWYTRNHTDLRKALDDGKDLGMPDGVLINGKGPYRYNNTLVPDGIDYETIEVHPGKTYRLRVHNVGVSTSLNFRIQSHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLLSTDQNASTDYYIVASARFVNESRWQRVTGVAILRYTNSKGKARGPLPPAPDDQFDKTYSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDIYVLKNKPLEKINGKRRATLSGNSFVNPSTPIRLADQYKLKGVYKLDFPTKPLTGSPRTETSVINGTYRGFMEIILQNNDTKMHTYHMSGYAFFVVGMDFGDWSENSRGTYNKWDGIARTTAQVYPGAWTAILVSLDNVGVWNLRTENLDSWYLGQETYVRVVNPEVNNKTELPIPDNALFCGALSKLQKPQKVSSDAPSISRNKLKLFFTWLIVFAWIHIFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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