Glyma17g14710 - SoyBase

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Report for Sequence Feature Glyma17g14710

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11446742
stop:	11450473
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g14710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45190	AT	Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein \| chr2:18628450-18630552 REVERSE LENGTH=229	SoyBase	E_val: 6.00E-80	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010093	GO-bp	Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010154	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit development	SoyBase	N/A	ISS
GO:0010158	GO-bp	Annotation by Michelle Graham. GO Biological Process: abaxial cell fate specification	SoyBase	N/A	ISS
GO:0010159	GO-bp	Annotation by Michelle Graham. GO Biological Process: specification of organ position	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010450	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflorescence meristem growth	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0045165	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate commitment	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF04690	PFAM	YABBY protein	JGI		ISS
UniRef100_B9T2V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY1, putative n=1 Tax=Ricinus communis RepID=B9T2V4_RICCO	SoyBase	E_val: 1.00E-128	ISS
UniRef100_I1MUX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUX5_SOYBN	SoyBase	E_val: 1.00E-158	ISS

Expression Patterns of Glyma17g14710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g14710 not represented in the dataset	Glyma17g14710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g14710

Paralog	Evidence	Comments
Glyma05g04260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g14710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g138200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g14710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g14710

Limit To All Plant Sequences

>Glyma17g14710.2   sequence type=transcript   gene model=Glyma17g14710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAGGACTTGGTCTATAAACAAGAGCAATTATAAACAGAGAAAGAGAAGGGGGTGAATTCTGTGCCTTTGAATTCTCTAGTTGTATATCTATCGAAGAGAGGACCAGACCAGACCAAATAGATCAGATCAGCCTCTTTCCCTCTCACTCTCTTTCTCTCTCTCTGTCTCTCTGCACCTTTCTTTCACAACTCATAATCAAAAAAAGCATATCCAAGGTGTGGTGGTTAAGCTGTCCATCTATCAATCAATCCAATCAATCAAGAGACCAATCATCAACCGAATATAAGAGAACGAAAAAAGGGGGCTACCCAAAATGTCATCCTCTTCCAGCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACCGTCCTCGCTGTATGAACTGAACCAAAACACTTCATTCCCCACTTTTCTACCTCTAGGGTTTTTCAATGCTACCTACTCCACCCTCTTCTCTAAATTCTTTCACTTTCTTTCTCTCTCAATGTTTTCTTCTTGTTTTATTTAATTAATTATTACTCGCCCAATTTTTTATGAATAAATATTAATTGTTTATTTCTTAGTTTTTGTTACTCGCCAAATTATGTATGTAAAATTTTGTCCATTGATCTTTTCCCCCTTAATTTTCAGGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTCCCAGTGAACATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTCAGTGCGTCACATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCACAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGATGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAATTCACCCCAGTCTGTTTTCTCTTTCGAAGAAATTATGCAAAGAGGAAAAATTTTCCAAGTTCCACCAACCTATGAAGCTCAGGAACTCTGATTCCTTAACTTATAAATGCATCTATTTGTGGCTCAAGAGCGATTATGTTGATATAACTAAGGACTACTACTACACTAGGACTAGCTCTTGGGGTTGTGCATGCATGCATGTAGTTCTCTTCTTATGAGTAGACTTTAATTATTAACTTTCATGTTCTTCAATTCCCCCAGTACTACTGCAGCTGATTGCTTATCTAATCAATAATTAATTAGCCATACTTTCAGTTTTTGCCTACAAGTATGTTCCTTTTAATTTATTTTTACACGGATAAAGAGAGAAATAAA

Coding sequences of Glyma17g14710

Limit To All Plant Sequences

>Glyma17g14710.1   sequence type=CDS   gene model=Glyma17g14710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCCTCTTCCAGCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACCGTCCTCGCTGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTCCCAGTGAACATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTCAGTGCGTCACATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCACAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGATGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAA

>Glyma17g14710.2   sequence type=CDS   gene model=Glyma17g14710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTCAGTGCGTCACATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCACAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGATGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAA

Predicted protein sequences of Glyma17g14710

Limit To All Plant Sequences

>Glyma17g14710.1   sequence type=predicted peptide   gene model=Glyma17g14710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSSTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPTPNFLMNQTNFSASHEFSMPARTAADELPRPPITNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQDGEEVLMKDGFYASANVGVSPY*

>Glyma17g14710.2   sequence type=predicted peptide   gene model=Glyma17g14710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPTPNFLMNQTNFSASHEFSMPARTAADELPRPPITNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQDGEEVLMKDGFYASANVGVSPY*

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