Glyma17g14700 - SoyBase

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Report for Sequence Feature Glyma17g14700

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11420112
stop:	11426915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g14700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12260	AT	Annotation by Michelle Graham. TAIR10: NAC 007 \| chr1:4163058-4164486 REVERSE LENGTH=395	SoyBase	E_val: 3.00E-154	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_F1T108	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Populus trichocarpa RepID=F1T108_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1MUX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUX4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g14700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g14700

Paralog	Evidence	Comments
Glyma05g04250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g14700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g138100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g14700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g14700

Limit To All Plant Sequences

>Glyma17g14700.1   sequence type=CDS   gene model=Glyma17g14700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACGTTTTCACATGTACCACCAGGCTTTCGATTTCATCCGACCGATGAAGAACTTGTCGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAATTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTATTTCTTTAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGAATGACAACAATGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGGCGCAGTATTTCTCTGCCTTATGCATCATACCACCACCACCACCACCCTAGCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCACAACTTGAAAGCCCCAAAGTTACTCAATCAGCATGCTCAGTTGTCCCTTATGGCTATGAAAACAACAACAACAACAACAACAACAACAATGGAAGCACCTTGCAGTTCTCATCACTCACTCAGGAAGAACAGTTACAATATTGCAATAACCAACAAAGTCACCATTCTCTCTATGGCAGCAATGATCATGCGGTTGACCAGGTCACAGATTGGCGTGTACTTGACAAATATGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTCGTTTCCAAGGAAACCAGTTATTCCAATGCACCCATTTTCAATGTGACGGAACAAGTTTCTGTGGTTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA

Predicted protein sequences of Glyma17g14700

Limit To All Plant Sequences

>Glyma17g14700.1   sequence type=predicted peptide   gene model=Glyma17g14700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTSQEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDLESPRRSISLPYASYHHHHHPSCKPELMELQYNNIPHDAFLQLPQLESPKVTQSACSVVPYGYENNNNNNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKYVASQLSHNNQDVVSKETSYSNAPIFNVTEQVSVVANGSKKEQVSQEYASTSTSSYQIDLWK*

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