Glyma17g14680 - SoyBase

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Report for Sequence Feature Glyma17g14680

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11398695
stop:	11403449
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g14680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62710	AT	Annotation by Michelle Graham. TAIR10: beta vacuolar processing enzyme \| chr1:23224070-23226857 REVERSE LENGTH=486	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006624	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar protein processing	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
KOG1348	KOG	Asparaginyl peptidases	JGI		ISS
PTHR12000	Panther	HEMOGLOBINASE FAMILY MEMBER	JGI		ISS
PTHR12000:SF2	Panther	HEMOGLOBINASE	JGI		ISS
PF01650	PFAM	Peptidase C13 family	JGI		ISS
UniRef100_I1MUX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUX2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P49045	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar-processing enzyme n=1 Tax=Glycine max RepID=VPE_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g14680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g14680

Paralog	Evidence	Comments
Glyma05g04230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g14680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g137800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g14680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g14680

Limit To All Plant Sequences

>Glyma17g14680.1   sequence type=CDS   gene model=Glyma17g14680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTTGATCGCTCCATTATAAGCAAAACGACGTGGTACAGCGTCGTATTATGGATGATGGTGGTGCTGGTGAGAGTGCACGGTGCAGCCGCGAGGCCGAACCGGAAGGAGTGGGACTCAGTCATAAAGTTACCGACTGAACCGGTGGATGCTGACTCGGATGAAGTGGGAACACGATGGGCGGTTCTCGTGGCTGGTTCAAACGGCTACGGAAACTACAGGCATCAAGCAGATGTGTGCCATGCGTACCAGTTGCTGATAAAAGGTGGACTAAAAGAAGAGAACATAGTGGTGTTTATGTACGATGACATAGCTACCAACGAGTTGAATCCTAGACATGGAGTCATCATCAACCACCCTGAGGGAGAAGATCTGTATGCTGGTGTTCCTAAGGATTACACCGGTGATAATGTGACGACGGAGAACCTCTTTGCTGTTATTCTTGGAGACAAGAGTAAATTGAAGGGAGGAAGTGGCAAAGTGATCAACAGCAAACCCGAGGACAGAATATTTATATACTACTCTGATCATGGAGGTCCTGGAATACTTGGGATGCCAAACATGCCATACCTTTATGCCATGGATTTTATTGATGTCTTGAAGAAGAAACATGCATCTGGAAGTTACAAGGAGATGGTTATATACGTGGAAGCTTGTGAAAGTGGGAGCGTGTTTGAGGGTATAATGCCTAAGGATCTGAATATTTATGTCACAACTGCATCAAATGCACAAGAGAATAGTTGGGGAACTTATTGTCCTGGAATGGATCCTTCTCCACCTCCAGAGTACATCACTTGCCTAGGGGATTTGTACAGCGTTGCTTGGATGGAAGATAGTGAGGCTCACAATCTAAAAAGGGAATCCGTGAAACAACAATACAAATCGGTAAAGCAACGGACTTCAAATTTCAACAACTATGCGATGGGTTCTCATGTGATGCAATATGGTGATACCAACATCACAGCTGAAAAGCTTTATTTATACCAAGGTTTTGATCCTGCCACTGTGAACTTCCCTCCACAAAACGGCAGGCTAGAAACTAAAATGGAAGTTGTTAACCAAAGAGATGCAGAACTTTTGTTCATGTGGCAAATGTATCAGAGATCAAACCATCAGTCAGAAAATAAGACAGACATCCTCAAACAAATTGCGGAGACAGTGAAGCATAGGAAACACATAGATGGTAGCGTGGAATTGATTGGAGTTTTACTGTATGGACCAGGAAAAGGTTCTTCTGTTCTACAATCCGTGAGGGCTCCTGGTTCGTCCCTTGTTGATGACTGGACATGCCTAAAATCAATGGTTCGGGTGTTTGAAACTCACTGTGGGACACTGACTCAGTATGGCATGAAACACATGCGAGCATTCGCCAACATTTGCAACAGTGGCGTTTCTGAGGCCTCCATGGAAGAGGCTTGTTTGGCAGCCTGTGAAGGCTACAATGCTGGGCTATTGCATCCATCAAACAGAGGCTACAGTGCTTGA

Predicted protein sequences of Glyma17g14680

Limit To All Plant Sequences

>Glyma17g14680.1   sequence type=predicted peptide   gene model=Glyma17g14680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDRSIISKTTWYSVVLWMMVVLVRVHGAAARPNRKEWDSVIKLPTEPVDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIYVTTASNAQENSWGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSEAHNLKRESVKQQYKSVKQRTSNFNNYAMGSHVMQYGDTNITAEKLYLYQGFDPATVNFPPQNGRLETKMEVVNQRDAELLFMWQMYQRSNHQSENKTDILKQIAETVKHRKHIDGSVELIGVLLYGPGKGSSVLQSVRAPGSSLVDDWTCLKSMVRVFETHCGTLTQYGMKHMRAFANICNSGVSEASMEEACLAACEGYNAGLLHPSNRGYSA*

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