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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12080 | AT | Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356 | SoyBase | E_val: 2.00E-126 | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PF02178 | PFAM | AT hook motif | JGI | ISS | |
| PF03479 | PFAM | Domain of unknown function (DUF296) | JGI | ISS | |
| UniRef100_B9RBU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBU6_RICCO | SoyBase | E_val: 2.00E-135 | ISS |
| UniRef100_I1MUV6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUV6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g14520 not represented in the dataset |
Glyma17g14520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g04040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g136200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g14520.2 sequence type=transcript gene model=Glyma17g14520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCCAACAACTTTAATACTATTTTATACATTTCTCCACCAGATTCCAACCAAAACCAAATAATTATTTCCGTTAAAATATTATTTCCGGCATTAAATATTAATTCATTAAAATAATTTTTAATGCCCCCAGTTCAGTATATCTCCTTTTCCTCCCCTTTATTTTTTAATCTCAATTTGGACAGTCTTAGGAAAGTTAGGAACCCAATTACCTGAACAACAAAAACAAAGGATTCATTTTATCTGGCCATTTTCATTTCCCTTGGAAACTCAAAATATTTCAAATTTCACTCTTTCTTTCTGCACAATATTTTCCCATCTATTTTTTTCTTCTTCTCAAAACTCACATATTAGTATTTTCTCCCACAAAATTTCAGCTCATAATTTTTATTTTTCGATTTCATCCAATCCTGCTAATTTATTTTTAATGACGAAATTTACGCAAATGGTGCAAAGGTGAAGATTTTCCACATCTTGTTTCATGCCCAGCTCCTCAAGCTAGCTTTTAATTTTGATTTTTCTCATTTCCTGGCTTAAATTTTTCATCTTTTCTAAAAGAAAAAAAATCATTTCCCAGCAGCATAGCATAGTAGTAGAAGTTTTGGGTGATTGAGTTTGAAGAAGAAGAAAAAATATGAGATATTGATGTGTGGTTTTACTTTATGTTACGTGTGAGTGGTACTACTTCTCAAGTGTTTGAACATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAATTAACTTATAGATCTTCATTCCATCTGAATTTACATTTACTGCTGACAACATTGTAATGTGATGGATTCCTAGTTGTTGGCTTTGCTTTCCGTTGTTTGTTGTGTCTGTAATTGTTGACTTTCTACCGGGACCAGCATTGTTTTCAGAGGTTTACCAGCTTCCTGTTCTTGTAGAATTTGAGTTGGCTGATTAGGTATGCTTTTAATGCTGATGTTGTGACATGAACAACACTTTGATGTGATAGTTATTCATGAGAATCCATCTTCCCTTTGGAGTGATAGATTGCGCAATCCACGTTATTTCTATTAAGACAATATTCTTAATTTGAGAATGACCATTTCTATAATTATTGTACACCTTGTAACCACATAAGATTCTTGATC
>Glyma17g14520.1 sequence type=CDS gene model=Glyma17g14520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTTTGTCTTTATGTAG >Glyma17g14520.2 sequence type=CDS gene model=Glyma17g14520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAA
>Glyma17g14520.1 sequence type=predicted peptide gene model=Glyma17g14520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METSGGVSGGVTLVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSVPPSPHPPHTAAMEAYPAKMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQRHEVITSVIPAAVVPISTLDPVPILSAASSIRNDNWSAMPAEAKNKPADINVSLPAGFVFM* >Glyma17g14520.2 sequence type=predicted peptide gene model=Glyma17g14520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METSGGVSGGVTLVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSVPPSPHPPHTAAMEAYPAKMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQRHEVITSVIPAAVVPISTLDPVPILSAASSIRNDNWSAMPAEAKNKPADINVSLPAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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