Report for Sequence Feature Glyma17g13990
Feature Type: gene_model
Chromosome: Gm17
Start: 10756273
stop: 10759606
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g13990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G63160 AT
Annotation by Michelle Graham. TAIR10: replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333
SoyBase E_val: 0 ISS
GO:0006260 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA replication
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005663 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: DNA replication factor C complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0991
KOG
Replication factor C, subunit RFC2
JGI ISS
PTHR11669 Panther
REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
PF08542 PFAM
Replication factor C
JGI ISS
UniRef100_B9RC55 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9RC55_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MUQ7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUQ7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g13990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g13990
Paralog Evidence Comments
Glyma05g03440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g13990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g130800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g13990
Coding sequences of Glyma17g13990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g13990.1 sequence type=CDS gene model=Glyma17g13990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGTCATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAGAAGTACCGTCCCAGCAAGGTCGCCGACATTGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGAAAAACCACTAGCATACTCGCCCTCGCGCACGAGCTCCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCCTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATTAAGATGTTTGCTCAGAAGAAAGTGACGCTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACAATGGAGATATATTCAAACACCACTCGATTTGCTCTTGCTTGCAATACCTCAGCCAAGATTATTGAGCCCATTCAGAGTAGATGCGCCATTGTGCGATTTTCACGATTGTCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATCTTCACTGCTGACGGTGATATGAGACAGGCGTTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCATTGCATGTGAAGAATATGGTGTGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTAGCTAAGCTTTCTCTTGTTCGTGAGACAGCTAAAGCTGTATGA
Predicted protein sequences of Glyma17g13990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g13990.1 sequence type=predicted peptide gene model=Glyma17g13990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV*