SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05350 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr1:1560891-1564005 REVERSE LENGTH=431 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0048037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cofactor binding | SoyBase | N/A | ISS |
| KOG2336 | KOG | Molybdopterin biosynthesis-related protein | JGI | ISS | |
| PTHR10953 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | ISS | |
| PTHR10953:SF9 | Panther | UBIQUITIN-ACTIVATING ENZYME-RELATED | JGI | ISS | |
| PF00899 | PFAM | ThiF family | JGI | ISS | |
| UniRef100_G7J3W6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-like modifier-activating enzyme n=2 Tax=Medicago truncatula RepID=G7J3W6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUQ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUQ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g13940 not represented in the dataset |
Glyma17g13940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g03350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g130200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13940.1 sequence type=CDS gene model=Glyma17g13940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTCGTACTCAAAGAGTTGCACGCCGATCTTCAATCTCTGAGCCAATCGCTTCCCGATCCATCTCACCATGATTTGCTCCGCAAGATTCAATTGCGTGTTGAGGACCTTGCGAAGCTTGCAGAGGCTGCACCTGTTCGTCGCTCTAAAGTTGAGGATATGAGTGCTGAGGTTGTAGATAGCAATCCTTATAGTCGGCTTATGGCACTTCAGAGAATGGGTATTGTGGACAACTATGAAAGAATACGCGATTTCTCCGTTGCCATAGTTGGAGTAGGTGGTGTAGGAAGTGTTTCGGCTGAGATGCTAACTAGATGTGGTATAGGTAGACTTTTGTTGTATGATTATGACAAAGTGGAGCTAGCAAACATGAATAGGTTGTTCTTTCGTCCAGATCAGGTTGGCATGACAAAGACTGATGCAGCTGTACAGACTCTGTCAGACATAAACCCTGATGTTGTACTTGAGAGCTATACACTGAATATCACCACCGTCACAGGTTTTGAAACCTTTATGTCGAGTTTGAAAAATAAGTCACTTCGCCCAAATAAACAAGGGAGTGGCGTGGATCTGGTTTTAAGTTGTGTGGATAATTATGAAGCAAGAATGGCTGTTAACCAGGCTTGTAATGAATTGAGCCAAACATGGATGGAATCAGGTGTTTCTGAGGATGCTGTTTCTGGCCATATTCAATTACTTATTCCTGGAGAAACTGCCTGTTTTGCGTGTGCACCTCCTCTTGTTGTTGCATCTGGGGTAGATGAACGTACGCTCAAGCGGGAAGGGGTTTGTGCTGCATCTTTACCCACCACTATGGGGGTTGTTGCTGGCCTTCTAGTCCAAAACACTCTAAAATTATTGCTAGGCTTTGGACAAGTCTCCCCGTATTTGGGATATAATTCTCTTAAGGATTTTTTCCCAACTATGCAAATGAAGCCAAACCCTCAATGTTCAAATGTAGCTTGTTTGGAAAGACAGGAAGAGTACATGCTTGCAAAACCAGCAAGAGATGCTGCAGCCAAAGCAAAAATGGAAGCTGAAGCACCATCAACTGAGGAAGTGCCACTTCATGAAGAAAATGAATGGAATATAAGTGTTGTTGATGATATTGAGCTGGATAGTCCGGATACCAGAAGTTCAGATGTTCTGCCGGAAGGTCTCACACATGAACTTCCTACTGCTGACGAGTTTCATAAGGCAACTCTTGACGCTCCATTAGTTGACAATGACGACCTTGAAGATCTTCGTAGGCAACTTGAAGCCATTAATTCTGCATAG
>Glyma17g13940.1 sequence type=predicted peptide gene model=Glyma17g13940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVVLKELHADLQSLSQSLPDPSHHDLLRKIQLRVEDLAKLAEAAPVRRSKVEDMSAEVVDSNPYSRLMALQRMGIVDNYERIRDFSVAIVGVGGVGSVSAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPDQVGMTKTDAAVQTLSDINPDVVLESYTLNITTVTGFETFMSSLKNKSLRPNKQGSGVDLVLSCVDNYEARMAVNQACNELSQTWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKREGVCAASLPTTMGVVAGLLVQNTLKLLLGFGQVSPYLGYNSLKDFFPTMQMKPNPQCSNVACLERQEEYMLAKPARDAAAKAKMEAEAPSTEEVPLHEENEWNISVVDDIELDSPDTRSSDVLPEGLTHELPTADEFHKATLDAPLVDNDDLEDLRRQLEAINSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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