SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50380 | AT | Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein F1 | chr5:20516382-20518433 REVERSE LENGTH=683 | SoyBase | E_val: 0 | ISS |
| GO:0006887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: exocytosis | SoyBase | N/A | ISS |
| GO:0006904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0000145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exocyst | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG2344 | KOG | Exocyst component protein and related proteins | JGI | ISS | |
| PTHR12542 | Panther | EXOCYST COMPLEX PROTEIN EXO70-RELATED | JGI | ISS | |
| PTHR12542:SF7 | Panther | EXOCYST COMPLEX PROTEIN EXO70 | JGI | ISS | |
| PF03081 | PFAM | Exo70 exocyst complex subunit | JGI | ISS | |
| UniRef100_G7JLE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex component n=1 Tax=Medicago truncatula RepID=G7JLE3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E67C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E67C related cluster n=1 Tax=unknown RepID=UPI000233E67C | SoyBase | E_val: 0 | ISS |
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Glyma17g13900 not represented in the dataset |
Glyma17g13900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g03310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g129700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13900.1 sequence type=CDS gene model=Glyma17g13900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCACCACCAGTCTTGGCGGCGGCGCAGGCGGAGACGACCGCGTCCTCGCCACAGCTCAGCAGATCGTGAAGAGTCTTAGAGCGGCCAAAGAGGATCGCGAAGACATGCTTATGATCTTCTCTGCCTTCGACAACCGTCTCTCCGGCATCTCCGACCTCATCAACGGCGACGATTCGAAGTCTTCTGATGAGGAAGAACTCGACCGCTTCGAAGCCGCGGAGAAGGTGATTCTCGCTGACGCCTCCCACTCCGGCGAGCCTTCGCGCCAATCCACGTCGCTCTTCAACCCTCCGAACAATCCCGCGGAGTACTTCTCAGCCGTCGACGAAATCATCCACTGGATGGAGCAGTTCTCGATCGCGCCGCCGCCGTCCTCCGCCGCGGGTCGCACCATCCAGGTCATCGCGGACCGCGCCGAGAACGCGATTCAGCTCGCGATGTCGCGGCTCGAGGAGGAGCTTCGGCACGTGCTGATTTGCAACACGATCCCTCTCGACGCCGTGAGCCGCTACGGCTCGATCAGGAGGGTTTCGCTCTCGTTCGGCTCGCATGACGGCGCCGCCGCAATTGACGATTCCCCCCTCCAGAGCTTCGGCGAGGTCGACTCGAGCCGCTTCCACGACCGCGCCGCGAGCCTCGGCGACGACTTGTTCGTCGATTTGGTGCGTCCCGAGGCCGTTCAGGACCTCAGAGAAATCATCGATCGCATGGTTAGGTCTGGTTATGAGAGAGAGTGTCTACAGGTTTATAGCAGCGTCCGTCGTGACGCTTTGGATGAGTGTTTGGTTATTCTCGGTGTTGAGAGGTTGAGTATTGAAGAGGTTCAGAAGGTTGAGTGGAGGAGTTTGGATGAGAAGATGAAGAATTGGGTTCAGGCTGTTAAGGTTGTTGTTGGAGTGCTTCTCAGTGGTGAGAAGAGGCTCTGTGATGGTTTGTTTGGCGATTTGGATGATTTGAAGGAGATTTGTTTCAATGAGACTGCTAAGGGCTGTGTGATGCAGTTGCTGAATTTTGGTGAGGCTATCGCGATTTGTAAGCGCTCGCCCGAGAAGTTGTTTCGGATTTTGGACATGTATGAGGCTTTGAGGGATGCTATGCCTGATTTGCAGGCCATGGTTTCGGATGAGTTTGTGATTGGTGAGGCCAATGGCGTGCTGAGTGGGCTTGGTGAGGCTGCCAAAGGGACTTTTGCTGAGTTTGAGAATTGTATTAGGAATGAGACTTCCAAGAAGCCGGTCATAACCGGGGATGTTCATCCTTTGCCTCGTTATGTTATGAATTATCTCAAGTTGCTTGTTGATTATGGTGACCCTATGGATTCGCTTCTGGAGCTTAGTGAGGAGGATCTCTATCGGTTTAAAAATGATCTTGGTGGTGATGGTTCGCAGTTAGAGGCCATGTCGCCCTTGGGGCAGCGAATTCTGCTGCTCATGTCGGAGCTTGAGTATAATCTTGAGGAGAAGTCGAAGCTTTATGAGGACAGTGCAATGCAGCAGGTGTTTTTGATGAACAATCTTTATTACCTAGTGCGGAAAGTGAAGGACTCGGACCTAGGGAAGGTCTTGGGGGATAATTGGATTAGGAAACGCCGTGGTCAGATACGCCAGTATGCTACAGGGTATCTCAGAGCCTCTTGGAGCAGGGCCTTATCTTGTTTGAAGGATGAAGGGATTGGAGGGAGCTCCAATAATGCATCAAAGATGGCTTTGAAGGAGAGGTTCAAGAGTTTCAATGCTTGTTTTGAAGAAATTTACAGGGTTCAGACAGCTTGGAAGGTACCGGATGACCAGCTTCGGGAGGAGCTGCGGATATCTATATCAGAAAAGGTGATTCCTGCATACCGCTCGTTTGTGGGAAGATTTAGGTGTCAGTTAGAGGGAAGGCATGTTGGGAAGTACATTAAGTATACACCAGAGGATCTAGAGACCTATCTATTAGATTTATTTGAAGGATCCCCTGCTGTATTGCATCACATAAGGAGGAAAAGTACATAG
>Glyma17g13900.1 sequence type=predicted peptide gene model=Glyma17g13900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTTSLGGGAGGDDRVLATAQQIVKSLRAAKEDREDMLMIFSAFDNRLSGISDLINGDDSKSSDEEELDRFEAAEKVILADASHSGEPSRQSTSLFNPPNNPAEYFSAVDEIIHWMEQFSIAPPPSSAAGRTIQVIADRAENAIQLAMSRLEEELRHVLICNTIPLDAVSRYGSIRRVSLSFGSHDGAAAIDDSPLQSFGEVDSSRFHDRAASLGDDLFVDLVRPEAVQDLREIIDRMVRSGYERECLQVYSSVRRDALDECLVILGVERLSIEEVQKVEWRSLDEKMKNWVQAVKVVVGVLLSGEKRLCDGLFGDLDDLKEICFNETAKGCVMQLLNFGEAIAICKRSPEKLFRILDMYEALRDAMPDLQAMVSDEFVIGEANGVLSGLGEAAKGTFAEFENCIRNETSKKPVITGDVHPLPRYVMNYLKLLVDYGDPMDSLLELSEEDLYRFKNDLGGDGSQLEAMSPLGQRILLLMSELEYNLEEKSKLYEDSAMQQVFLMNNLYYLVRKVKDSDLGKVLGDNWIRKRRGQIRQYATGYLRASWSRALSCLKDEGIGGSSNNASKMALKERFKSFNACFEEIYRVQTAWKVPDDQLREELRISISEKVIPAYRSFVGRFRCQLEGRHVGKYIKYTPEDLETYLLDLFEGSPAVLHHIRRKST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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