Glyma17g13850 - SoyBase

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Report for Sequence Feature Glyma17g13850

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10635967
stop:	10648414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02480	AT	Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein \| chr4:1082082-1088680 REVERSE LENGTH=1265	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0737	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF20	Panther	AAA-FAMILY ATPASE	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
UniRef100_G7J5J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spastin n=1 Tax=Medicago truncatula RepID=G7J5J3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF64	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF64 related cluster n=1 Tax=unknown RepID=UPI000233EF64	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13850

Paralog	Evidence	Comments
Glyma05g03270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g129200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13850

Limit To All Plant Sequences

>Glyma17g13850.2   sequence type=CDS   gene model=Glyma17g13850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAAAAGATCTTCCTCCTCGGAAGATAAATCTCCTTCGCCGAAGCGCCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAATCGGTGCCGACGCCGGCGGAGAATTCCAAGGATTTATCTTCCCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGACGCTCAGATCGCCGGAGCCGGTGCCGCCGATGGAGTGAGCTCTGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCGTTCTCTTCGTGGATTAATTATCAGAAACAGAATCCGAATATCGAAGGTGCGCCGTGGTGCAGGTTCTTGTCGCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCATTTTCACGATTGGTTCTAATAGAAGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGGGTGACGGAAGTGCTGTAGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCTGTTCTAGTAAATGGGACACATGTCAAGAAGAATACCAGCTGTGTACTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTATTGGGAAATTTCTGCCGCTTGAAAGGAGAAGCGGAGACCCTTCAGCTGTGGATGGGGCCTCTATTTTGGCTTCTCTTTCCAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGCACCGATGTCTCTAGTCGTTCTGTTCATCATGATTGTACAGAAACTGAGCTTGATGGCTCAGAATCAACTCCAAATGTGCGGAGTGATAAAGCAGCAGAGGTTCGAACAAGTGACAAGAATTCAACAATGGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAGAAGTATCTGTAAGCAGGTGTTGGAAGAAAGAAATGGGACGCTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGCAGATGTTCATGCTGCAATACTGGATGGAAAAGAAATAGATGCTTCTTTTGACAACTTTCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGACTTAATGCTGAGAAATCCTTCGGCTGCACTAAACTAAGTCCTACAGAAGACATGGCCAGGATCATGGACCCATTAGCTAGCGAAATAGAGACACCTAGCCCTTCAAATGCACCTACATCATATGGCTTTGAGTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCTAAAAGTTGCTCATTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTATATCAGACATCTCCAAGGGGACCGTCTAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACCGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTTGTAATAGGTTCACACACACAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTCGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGCCCCAAAACAAAATAGAACTTTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCTCTTCTAGCATCCTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACAGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTGTCCTGTGAGAGCATTCTGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGACAATTAACCAAGCCCTGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCTAACTTCATCAACATTTCTATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGAAGGAAACCGAGAGAGTTCTTGTCCTGGCTGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCCCCTAATCGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTTGCAAGTATGACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTTGCAGAAGGCCAACCAGCTCCAGCATTATGCAGCAGTGGGGACGTCAGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAGTCAGTAAATATGACTGAGCTTTTGCAATGGAATGAATTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGTTATTTCATGTGA

Predicted protein sequences of Glyma17g13850

Limit To All Plant Sequences

>Glyma17g13850.2   sequence type=predicted peptide   gene model=Glyma17g13850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSTRRSGSLSAKRSSSSEDKSPSPKRQKVDNGGSSEKSVPTPAENSKDLSSPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDATPAVPVTAPIADAACPSFSSWINYQKQNPNIEGAPWCRFLSQSAQNPNVAVCTPIFTIGSNRSCNFPLNDQTISGNLCKIKHTQGDGSAVAVLESMGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGIGKFLPLERRSGDPSAVDGASILASLSNRQDLTRWKSPSQTSSKPHQGTDVSSRSVHHDCTETELDGSESTPNVRSDKAAEVRTSDKNSTMDCNPDAGAEAGNVKISGVNDFLRPFFRILAQPSCKLKLSRSICKQVLEERNGTLDMQAASTLGTSVRCAVFKADVHAAILDGKEIDASFDNFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFGCTKLSPTEDMARIMDPLASEIETPSPSNAPTSYGFESQPKLETDNMPSTSGTAKSCSFKLGDRVKFSCSSSCGVYQTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSHSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKQNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESILYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM*

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