Glyma17g13811 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g13811

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10611306
stop:	10613383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13811

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58860	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein \| chr3:21763742-21765306 REVERSE LENGTH=457	SoyBase	E_val: 6.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF08387	PFAM	FBD	JGI		ISS
UniRef100_G7JLF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: F-box family-6 n=1 Tax=Medicago truncatula RepID=G7JLF9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7JLF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family-6 n=1 Tax=Medicago truncatula RepID=G7JLF9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13811

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g13811 not represented in the dataset	Glyma17g13811 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13811

Paralog	Evidence	Comments
Glyma05g03226	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13811 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g128800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13811

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13811

Limit To All Plant Sequences

>Glyma17g13811.1   sequence type=CDS   gene model=Glyma17g13811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGCAAGATGCAGGTAGCAGAGATAATCAACAGAAAAGAGCAAAATCTAACAATGAGGAAGATTATGAAGGAGATCTTATCAACAAATTACCAGATGGAATCCCTGTAGCCATTTTATCTAAATTGCCAATAAATGAGGCTGCTAGGACCAGCATCCTCTCAAGAAAATGGAGATATCTATGGACCTTTTTTTGTGGAACCTTAGAATTTGATGGTTCACCAATTATGAAAGACATGAAAAAAGACATTAAGAAGGCTGCAGGAAGGCAATTGCAGACGGCAATGGAGATCATGTATGATGCTGAAAGGCAAACATATACAACTTGGATCAATGAATTGTTAAGTTCACTCAAGAGTTCCACTCTACAAGGATTGAAATTTTGGTTTCATGTGGGTACTGGGTGTGATGTTGATAAGTGGATTCACTTTGCCATTCAAAAGAAGGTTCAAAAGCTTGAGCTGTATTTTGGACATACATTTGAATATGTTCTTCCATTGCACTTGTTTAAACTAGAAAGCTTTAATTCCTTGCATGTTTTGCGTCTGAAATCCATTACTGTGACCGAGGAGATGCTGGAGTATTTACTGTGTCGCTGTCCATTACTTAAAACGTTGAGCTTGGTTAACTCGGGAGTTCCAAAAACTATGAAGGTTTCAGGTCCATCACTCAAGCTGAAATGTCTAGAATTGGTAAGATGCTGGGAGCTGATAAAACTAGAAATTTTTGCTGAGAATTTGATGTCATTCAAATACTATGGATCTCATTTGGACACAGAATTTAAGAGCGTTCCATGTCTTGTGGAAGCAACATTTGGAGGATCCTTTGTGGAGTTCACTAGAGAAAGTTTTCTCCCACAAATAAAAGTGCTTAAATTGGATATTACACAAAACGAACCTCAAGTGCTTTTCCGGCTAAGTCAACTTCCCAAGTTAAAAAATCTCAAGCATTTGGAGCTGGTTGCCTGTGTTGATGATGGTATCACACTTGCTTGTGCATTGCTATTAAAGGCAACACATTCACTATGGAGGTTCACACTCAAGATGCTAAATACCAAACCCTCTTTTAGAACAGAACGCAAATTTACAATGGAATCTCGGTGCAATCTCAAAGAGTTGGAATTGGTTGGGTTTTGTGGAGCAGCATGTGAAGTTGAATTAGTTATGTACATACTTGAGAATGCAGCTGAACTCCAGAAGATAATTATTGACACAAGGTTACCAACTAAACCGAAATTGAGACCGCTAGGGGAGCAATGCAAAACTTGGGATCATGAGGAAAACAGAAAGCGTGCAAGAGGACTTCAGGAGAAAATACCACCTTGGATTGAGTTTGTTTGTATTTGA

Predicted protein sequences of Glyma17g13811

Limit To All Plant Sequences

>Glyma17g13811.1   sequence type=predicted peptide   gene model=Glyma17g13811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMQDAGSRDNQQKRAKSNNEEDYEGDLINKLPDGIPVAILSKLPINEAARTSILSRKWRYLWTFFCGTLEFDGSPIMKDMKKDIKKAAGRQLQTAMEIMYDAERQTYTTWINELLSSLKSSTLQGLKFWFHVGTGCDVDKWIHFAIQKKVQKLELYFGHTFEYVLPLHLFKLESFNSLHVLRLKSITVTEEMLEYLLCRCPLLKTLSLVNSGVPKTMKVSGPSLKLKCLELVRCWELIKLEIFAENLMSFKYYGSHLDTEFKSVPCLVEATFGGSFVEFTRESFLPQIKVLKLDITQNEPQVLFRLSQLPKLKNLKHLELVACVDDGITLACALLLKATHSLWRFTLKMLNTKPSFRTERKFTMESRCNLKELELVGFCGAACEVELVMYILENAAELQKIIIDTRLPTKPKLRPLGEQCKTWDHEENRKRARGLQEKIPPWIEFVCI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain