Glyma17g13790 - SoyBase

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Report for Sequence Feature Glyma17g13790

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10576466
stop:	10580845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24830	AT	Annotation by Michelle Graham. TAIR10: arginosuccinate synthase family \| chr4:12793085-12795857 REVERSE LENGTH=494	SoyBase	E_val: 0	ISS
GO:0006526	GO-bp	Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process	SoyBase	N/A	ISS
GO:0006567	GO-bp	Annotation by Michelle Graham. GO Biological Process: threonine catabolic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: argininosuccinate synthase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1706	KOG	Argininosuccinate synthase	JGI		ISS
PTHR11587	Panther	ARGININOSUCCINATE SYNTHASE	JGI		ISS
PF00764	PFAM	Arginosuccinate synthase	JGI		ISS
UniRef100_G7JWM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Argininosuccinate synthase n=1 Tax=Medicago truncatula RepID=G7JWM6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MUN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13790

Paralog	Evidence	Comments
Glyma05g03190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g128600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13790

Limit To All Plant Sequences

>Glyma17g13790.1   sequence type=CDS   gene model=Glyma17g13790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAATTGAAAGCTTCTCCTTTGTGTTCAACCCCTGCCACTGCTCCTTCCCTTCATACAACAGGGCACCTTCTGTACCATCAGTTCTGGAAGGCAAAGCCTTCGTCATTCAAAGAGTTGGGGCTAAGAACAAGCATTGGTGCCACTAAACTTAAAGTTATTAAAGCAGCTGCACGCAGTGATACAGAGGTAGTTTCTGAATCCACAAAAGGTGGTGGCCTACGTGGAAAATTGAATAAGGTGGTGTTGGCTTACAGTGGTGGCTTAGACACATCAGTCATTGTTCCATGGCTCAGAGAAAATTATGGTTGTGAAGTTGTTTGCTTCACTGCTGATGTTGGCCAAGGTATAAAGGAATTGGAAGGTTTAGAACAGAAAGCCAAAGCCAGTGGGGCCTGTCAATTAGTGGTAAAAGATTTGAAGGAGGAATTTGTTAAAGATTATATATTTCCTTGCCTGCGTGCTGGTGCAATTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCCCGCCCTGTAATTGCGAAGGCCATGGTTGATGTTGCCAAAGAAGTTGGAGCTGATGCTGTTTCCCATGGGTGTACAGGGAAAGGAAATGATCAGGTTCGATTTGAGCTCACTTTCTTTGCTCTAAACCCCAAGCTCAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTATGCTAAAAAGCATAATATACCTGTTCCTGTGACAAAGAAATCCATATATAGCAGGGATAGGAATCTTTGGCACCTTAGCCATGAGGGAGATATTTTAGAAGACCCTGCTAATGAACCTAAAAAGGACATGTACATGATGTCTGTAGACCCAGAGGATGCTCCTGATCAAGCAGAATATGTGGAAATTGGATTAGAGTCGGGGCTTCCTGTTTCAGTCAATGGGAAGAGGCTTTCACCAGCATCTTTACTTGCTGAGCTCAATGAGATTGGTGGAAAGCATGGAATTGGCAGGATTGACATGGTTGAGAATCGGCTTGTAGGTATGAAGAGCCGAGGAGTGTACGAAACTCCTGGTGGAACCATACTGTTTGCTGCAGCACGAGAGTTGGAGTCTTTGACACTTGATCGTGAAACAATACAAGTCAAAGATTCATTAGCCCTTAAATATGCAGAGTTAGTGTATGCTGGCAGATGGTTTGATCCTCTTCGGGAGTCCATGGATTCCTTTATGCAGAAGATCACAGAGACCACAACAGGTTCTGTGACTTTGAAATTGTACAAAGGTTCTGTTATTGTAACTAGTCGAATGAGTCCCTTTAGCCTGTATAGGGAAGACATTTCATCATTTGAGAGTGGGCAGATATATGATCAAGCTGATGCTGCTGGGTTCATTCGGCTTTATGGTCTTCCAATGAAGGTTCGAGCAATGCTTGAGCAGGGCATCTAA

Predicted protein sequences of Glyma17g13790

Limit To All Plant Sequences

>Glyma17g13790.1   sequence type=predicted peptide   gene model=Glyma17g13790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQLKASPLCSTPATAPSLHTTGHLLYHQFWKAKPSSFKELGLRTSIGATKLKVIKAAARSDTEVVSESTKGGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELEGLEQKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNIPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSVDPEDAPDQAEYVEIGLESGLPVSVNGKRLSPASLLAELNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFAAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDSFMQKITETTTGSVTLKLYKGSVIVTSRMSPFSLYREDISSFESGQIYDQADAAGFIRLYGLPMKVRAMLEQGI*

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