Glyma17g13770 - SoyBase

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Report for Sequence Feature Glyma17g13770

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10553578
stop:	10557136
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56110	AT	Annotation by Michelle Graham. TAIR10: homolog of nucleolar protein NOP56 \| chr1:20984544-20986893 REVERSE LENGTH=522	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
KOG2573	KOG	Ribosome biogenesis protein - Nop56p/Sik1p	JGI		ISS
PTHR10894	Panther	NUCLEOLAR PROTEIN NOP56	JGI		ISS
PF01798	PFAM	Putative snoRNA binding domain	JGI		ISS
PF08060	PFAM	NOSIC (NUC001) domain	JGI		ISS
PF08156	PFAM	NOP5NT (NUC127) domain	JGI		ISS
UniRef100_B9RAI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MUN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUN3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13770

Paralog	Evidence	Comments
Glyma05g03150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g128400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13770

Limit To All Plant Sequences

>Glyma17g13770.1   sequence type=CDS   gene model=Glyma17g13770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTGTTCCTTCTCTACGAATCCGCTTCGGGCTACACCCTGTTCGAGGTTCACGGCCTCGACGAAATCGGCCAGAACACCGAAGCGGTTCGGAACTCCGTTTCGGACCTCAACAGGTTCGGCAAAGTCGTTAAGCTTCGCTCCTTCAACCCTTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAAGATTGGTTCGCAGATATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAGTTTAATGTTAACCGTGTTGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATGTTAATTCGTTCTCCATGAGAGTCAGAGAGTGGTATTCATGGCACTTTCCTGAGCTGGTGAAAATTGTAAATGATAATTATCTGTATGCCAAAGTTGCAAAATTTATTGAGGATAAGGCAAAGTTGGCTGAAGACAAGATTCCAGCCTTAACTGACATAGTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCCTCCATGGGACAGGATTTGTCCCCAGTGGACTTGATCAACGTCCATCAATTTGCACAGAGGGTAATGGACCTATCTGAGTACAGAAAAAACTTGTATGATTACCTGGTTGCTAAAATGAATGATATTGCACCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCTCGTTTGATTTCCCATGCTGGTAGCCTCACAAATTTAGCTAAGTGCCCCTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTTTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCCAAATATGGTTTGATATTCCACTCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAACGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGGCTGCTATTGAAAGTGCTGAAAACAAAGATACAGAGATGGAAACAGAAGCACCTGCTGAAGTTTCAGGCAAGAAAACCAAAAAGAAGAAACAAAAAGCTGCTGATGCTGAAGATGACGTGGCTATAGATACAAATGGTGATGCTGTGGAGGATCATAAATCAGAGAGGAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGAACAGGAGATGGAGGTTGACGATCAGGCTGAAGATGATGGTGCCAATGGAGTCACAAGTGAGCAAGAAGGAACAGCTAAAAAGAAGAATAAAAAGGATAGTAATGGAGAAGCATTCGAGGCTGGTGAAGTGTCTAAGAAGAAGAAAAAGAAATCAAAAAAGAAGGACATCGAGTAA

Predicted protein sequences of Glyma17g13770

Limit To All Plant Sequences

>Glyma17g13770.1   sequence type=predicted peptide   gene model=Glyma17g13770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFLLYESASGYTLFEVHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQSNEFVSELLRGVRFHFDTFVGDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKAKLAEDKIPALTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSEYRKNLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSEKGTTVFGQKLREQVEERLDFYDKGVAPRKNIDVMQAAIESAENKDTEMETEAPAEVSGKKTKKKKQKAADAEDDVAIDTNGDAVEDHKSERKKKKKEKRKLEQEMEVDDQAEDDGANGVTSEQEGTAKKKNKKDSNGEAFEAGEVSKKKKKKSKKKDIE*

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