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Report for Sequence Feature Glyma17g13760

Feature Type:gene_model
Chromosome:Gm17
Start:10542462
stop:10546061
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g13760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63400AT Annotation by Michelle Graham. TAIR10: adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246 SoyBaseE_val: 4.00E-146ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006139GO-bp Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0046939GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide phosphorylation SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0004017GO-mf Annotation by Michelle Graham. GO Molecular Function: adenylate kinase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016776GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, phosphate group as acceptor SoyBaseN/AISS
GO:0019205GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleobase-containing compound kinase activity SoyBaseN/AISS
KOG3078 KOG Adenylate kinase JGI ISS
PTHR23359Panther ADENYLATE KINASE JGI ISS
PF00406PFAM Adenylate kinase JGI ISS
PF05191PFAM Adenylate kinase, active site lid JGI ISS
UniRef100_C6TBP8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Adenylate kinase 3 n=1 Tax=Glycine max RepID=C6TBP8_SOYBN SoyBaseE_val: 2.00E-171ISS
UniRef100_C6TBP8UniRef Annotation by Michelle Graham. Best UniRef hit: Adenylate kinase 3 n=1 Tax=Glycine max RepID=C6TBP8_SOYBN SoyBaseE_val: 2.00E-171ISS

Expression Patterns of Glyma17g13760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13760
ParalogEvidenceComments
Glyma05g03120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g128300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g13760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g13760
>Glyma17g13760.2   sequence type=transcript   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTCATAAAGTTTTCATTTTTGTGCTCGCTGCTAATTCAGATCCGAAAATTCGAAAATGCTTGTGTTAAATAGTTCGATGCTTTCGCACACGTTGCGTTCGAATATTGTAGATGCGGTTTTTAGGGTTTCCTTCGGTTGTGTTTGCTGTTGCTTGAGTCATAGAGAAAACGCTGAGAAATTCGTGTGGCTTTGCTTTTAGACAATAGAGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTTACTGGTGAACCACTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTTAAGACTGGAGGCATTTCACAAGCAAACCGAACCGGTTATTGATTACTATTCAAAGAAGGGCCTTGTTGCTAATCTTCATGCTGAGAAACCACCCAAAGAGGTGACAGTTGAAGTGGAGAAAGTGCTGTCTTAAAACATAGTTCATCTTTTGATCTCGGGCTTGAACTGCAATTGTTTTTTTTTTTTTTTGGCTATAGGAAAACTTTTGTTGCCAATTTGATCCTCGGGCTGTTCTCAAACCCAGATTCGAAGAGCAACTTTGATGAATAAAAAAATCAATTGAATTTGAATTTTGGTCTTTTTACTTTTTCTGCCTGAATTTTCACTCGACATTTGCAGGTGTTTTGGAACCCGTGAATCGTTTGATTTCATTAACTATTTGGAAAAAATTGAGCTACTTATAGAATGTTTGTGGGTGCTGCCCATACTTTTGCTTTTGATGGTGCGAAATGAAATTTTGCTTTGGTCTTTGTTTTTCA

>Glyma17g13760.3   sequence type=transcript   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTAACACTTGTAGCTAAACAAAGGGCAAGAGACGGCGAGTTTAGTTTTGAAAGCGTGCGTGTGCGTGGGAGGGTCCGAAGAAGCACAACGTTGGAGAAAGTGATTCTCGTTCTGTTCTTCTACTCACAAGAGCAACAACAACAACATCAGAATCAGAAACAGCAATGGCCAACACTAACTTGGACGATGTTCCCTCTCTGGATCTCATGACTGAGCTCCTTCGTCGCTTCAAGTGCTCTTCCAAACCTGACAAGCGTCTTATTCTCATTGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTTACTGGTGAACCACTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTTAAGACTGGAGGCATTTCACAAGCAAACCGAACCGGGCCTTGTTGCTAATCTTCATGCTGAGAAACCACCCAAAGAGGTGACAGTTGAAGTGGAGAAAGTGCTGTCTTAAAACATAGTTCATCTTTTGATCTCGGGCTTGAACTGCAATTGTTTTTTTTTTTTTTTGGCTATAGGAAAACTTTTGTTGCCAATTTGATCCTCGGGCTGTTCTCAAACCCAGATTCGAAGAGCAACTTTGATGAATAAAAAAATCAATTGAATTTGAATTTTGGTCTTTTTACTTTTTCTGCCTGAATTTTCACTCGACATTTGCAGGTGTTTTGGAACCCGTGAATCGTTTGATTTCATTAACTATTTGGAAAAAATTGAGCTACTTATAGAATGTTTGTGGGTGCTGCCCATACTTTTGCTTTTGATGGTGCGAAATGAAATTTTGCTTTGGTCTTTGTTTTTCA

>Glyma17g13760.4   sequence type=transcript   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTAACACTTGTAGCTAAACAAAGGGCAAGAGACGGCGAGTTTAGTTTTGAAAGCGTGCGTGTGCGTGGGAGGGTCCGAAGAAGCACAACGTTGGAGAAAGTGATTCTCGTTCTGTTCTTCTACTCACAAGAGCAACAACAACAACATCAGAATCAGAAACAGCAATGGCCAACACTAACTTGGACGATGTTCCCTCTCTGGATCTCATGACTGAGCTCCTTCGTCGCTTCAAGTGCTCTTCCAAACCTGACAAGCGTCTTATTCTCATTGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTAAGTCTGTGTCTTTAGTTAAACCCTGCATAATGATAGTTGCTTAAACATGACTTTGGATAATAGTCTGGATGTTTTGCCACTCACATGTGTAATCATATACGCTTAAAGATCCTGTCTAATCTTTGGGTGTAAGAGGGCATGTTAAGGTGTCCCATGTTGGCTAGGAATATGGCTAAAATACTCCTAATAAGACTTGGGCTATCCTCCCCCCTTGAGTTAAAGCCTAGTTCATTTTTAATCATATAATGAGGTACCACACTTTTTTGTTAAGATGTTTCATTGGGAAATGGATTTGATT
Coding sequences of Glyma17g13760
>Glyma17g13760.1   sequence type=CDS   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACACTAACTTGGACGATGTTCCCTCTCTGGATCTCATGACTGAGCTCCTTCGTCGCTTCAAGTGCTCTTCCAAACCTGACAAGCGTCTTATTCTCATTGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTTACTGGTGAACCACTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTTAAGACTGGAGGCATTTCACAAGCAAACCGAACCGGTTATTGATTACTATTCAAAGAAGGGCCTTGTTGCTAATCTTCATGCTGAGAAACCACCCAAAGAGGTGACAGTTGAAGTGGAGAAAGTGCTGTCTTAA

>Glyma17g13760.2   sequence type=CDS   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTTACTGGTGAACCACTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTTAAGACTGGAGGCATTTCACAAGCAAACCGAACCGGTTATTGATTACTATTCAAAGAAGGGCCTTGTTGCTAATCTTCATGCTGAGAAACCACCCAAAGAGGTGACAGTTGAAGTGGAGAAAGTGCTGTCTTAA

>Glyma17g13760.3   sequence type=CDS   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACACTAACTTGGACGATGTTCCCTCTCTGGATCTCATGACTGAGCTCCTTCGTCGCTTCAAGTGCTCTTCCAAACCTGACAAGCGTCTTATTCTCATTGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTTACTGGTGAACCACTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTTAAGACTGGAGGCATTTCACAAGCAAACCGAACCGGGCCTTGTTGCTAATCTTCATGCTGAGAAACCACCCAAAGAGGTGACAGTTGAAGTGGAGAAAGTGCTGTCTTAA

>Glyma17g13760.4   sequence type=CDS   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACACTAACTTGGACGATGTTCCCTCTCTGGATCTCATGACTGAGCTCCTTCGTCGCTTCAAGTGCTCTTCCAAACCTGACAAGCGTCTTATTCTCATTGGCCCACCTGGATCTGGGAAAGGCACCCAGTCACCAATCATAAAAGATGAGTACTGCTTATGCCACTTAGCTACTGGTGATATGTTAAGAGCAGCTGTAGCAGCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGAATAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATTATAGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAAAACCAAGGAGTTAAAGTTGATAAGGTGCTCAATTTTGCAATTGATGATGCAATCCTTGAGGAGCGAATTACTGGTCGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAATTTGCTCCTCCTAAGGTTCTTGGTGTTGATGATGTAAGTCTGTGTCTTTAG
Predicted protein sequences of Glyma17g13760
>Glyma17g13760.1   sequence type=predicted peptide   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTNLDDVPSLDLMTELLRRFKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMNKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLQNQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVLGVDDVTGEPLIQRKDDTAAVLKLRLEAFHKQTEPVIDYYSKKGLVANLHAEKPPKEVTVEVEKVLS*

>Glyma17g13760.2   sequence type=predicted peptide   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRAAVAAKTPLGVKAKEAMNKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLQNQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVLGVDDVTGEPLIQRKDDTAAVLKLRLEAFHKQTEPVIDYYSKKGLVANLHAEKPPKEVTVEVEKVLS*

>Glyma17g13760.3   sequence type=predicted peptide   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTNLDDVPSLDLMTELLRRFKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMNKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLQNQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVLGVDDVTGEPLIQRKDDTAAVLKLRLEAFHKQTEPGLVANLHAEKPPKEVTVEVEKVLS*

>Glyma17g13760.4   sequence type=predicted peptide   gene model=Glyma17g13760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTNLDDVPSLDLMTELLRRFKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMNKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLQNQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVLGVDDVSLCL*






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