SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03860 | AT | Annotation by Michelle Graham. TAIR10: malate synthase | chr5:1032276-1034527 REVERSE LENGTH=562 | SoyBase | E_val: 0 | ISS |
| GO:0006097 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glyoxylate cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004474 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malate synthase activity | SoyBase | N/A | ISS |
| KOG1261 | KOG | Malate synthase | JGI | ISS | |
| PTHR21631 | Panther | ISOCITRATE LYASE/MALATE SYNTHASE | JGI | ISS | |
| PTHR21631:SF1 | Panther | MALATE SYNTHASE | JGI | ISS | |
| PF01274 | PFAM | Malate synthase | JGI | ISS | |
| UniRef100_I1MUM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Malate synthase n=1 Tax=Glycine max RepID=I1MUM7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUM7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Malate synthase n=1 Tax=Glycine max RepID=I1MUM7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g13730 not represented in the dataset |
Glyma17g13730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g128000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13730.1 sequence type=CDS gene model=Glyma17g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCGGAACCTATGGCTATCCTACACCAGCAGTGAAAAAGATTGAGTCTTACTATGATGTGCCAGAGGGAGTGGATATTCGGGGAAGATATGATGCAGAGTTTGCAAAAATCCTCACAAAAGATGCTTTGAAATTCGTTGCTGACTTGCAACGTGAGTTCAGGAACCATATCAAGTATGCATTAGAGTGCAGAAGAGAAGCAAAGAAGAAGTACAATGAAGGGGCTCTTCCAGAGTTTGATCCTGCCACAAGGTACATCAGAGAGCAAGAGTGGGTGTGTGCACCTGTTCCACCAGCAGTTGCTGATAGAAAAGTTGAAATCACTGGCCCTGTGGATAGAAAGATGGTCATCAATGCTCTCAACTCTGGAGCTAAAGTCTTTATGGCTGATTTTGAAGATGCACTGTCACCAGGCTGGGAAAATCTTATGAGAGGCCAAGTGAACTTAAAGGATGCTGTGGCTGGGACCATAAGCTTGCATGACAAAGCAAGAAACAGGGTTTACAAGCTCAATGATCAAACAGCAAAGCTTTTTGTGCGACCAAGAGGTTGGCACCTACCGGAGGCACATATTCTGATTGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTATTTCTACCACAGCTACTCAGCATTCCGGCGCACTCAAGGTGCTGGCTTTGGCCCTTTCTTTTATCTTCCCAAGATGGAGCATTCAAGGGAAGCTAAGATTTGGAACAATGTGTTTGAGAAAGCTGAGAAGGTAGCAGGCATCGAAAGAGGAAGCATAAGGGCAACTGTTCTGATAGAAACACTTCCTGCAGTGTTTCAAATGAATGAAATTTTGTATGAACTGAAGGACCATTCAGTGGGTTTGAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTTAAGACCTTCCAAGCTCATCCAGATCGCCTCTTACCAGATAGGGTCCTAGTTGGCATGACTCAACACTTCATGAAAAGTTATTCTGATCTTCTCATCAGGACGTGCCACAGGCGCGGCGTGCATGCTATGGGAGGAATGGCAGCGCAGATTCCAATCAAAGAAGATCCAGTGGCTAACGAGGTAGCACTGGAACTTGTAAGGAAGGACAAGCTTAGAGAAGTGAAGGCAGGGCACGATGGAACTTGGGCTGCGCACCCTGGTCTCATTCCAGCCTGCATGGAGATTTTCAACAACAACATGGGCAATGCTTCCAACCAGATAGACACAGTGAAACGCGAAGATGGGGCAAACATCACCGAGCAAGACCTCTTGCAGATACCAAGAGGAGCCCGCACCATGGAAGGTCTCAGATTGAACACAAGGGTGGGAATTCAGTACGTGGCGGCGTGGCTCACCGGAAGCGGTTCGGTGCCTCTATACAACCTCATGGAGGATGCTGCCACTGCTGAGATCAGCAGGGTGCAGAATTGGCAGTGGCTCAAGTATGGAGTGGAGCTCAATGGGGATGGTCTTGGAGTGAAAGTGAACAAAGAACTTTTTGGTAGGGTTGTTGAAGAAGAGATGGCTAGGATTGAAAAGGAAGTGGGGACAGAGAAGTTCAAGAAGGGAATGTACAAGGAGGCTTGCAAGATCTTCACTCGCCAATGCACGTCACCAATGCTTGATGATTTTCTCACTCTGGATGCTTATAATTACATTGTCGTGCATCACCCGAGGGAAACATCAAAGCTTTGA
>Glyma17g13730.1 sequence type=predicted peptide gene model=Glyma17g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIGTYGYPTPAVKKIESYYDVPEGVDIRGRYDAEFAKILTKDALKFVADLQREFRNHIKYALECRREAKKKYNEGALPEFDPATRYIREQEWVCAPVPPAVADRKVEITGPVDRKMVINALNSGAKVFMADFEDALSPGWENLMRGQVNLKDAVAGTISLHDKARNRVYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHSYSAFRRTQGAGFGPFFYLPKMEHSREAKIWNNVFEKAEKVAGIERGSIRATVLIETLPAVFQMNEILYELKDHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVLVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKEDPVANEVALELVRKDKLREVKAGHDGTWAAHPGLIPACMEIFNNNMGNASNQIDTVKREDGANITEQDLLQIPRGARTMEGLRLNTRVGIQYVAAWLTGSGSVPLYNLMEDAATAEISRVQNWQWLKYGVELNGDGLGVKVNKELFGRVVEEEMARIEKEVGTEKFKKGMYKEACKIFTRQCTSPMLDDFLTLDAYNYIVVHHPRETSKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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