Glyma17g13680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g13680

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10467400
stop:	10469208
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66350	AT	Annotation by Michelle Graham. TAIR10: RGA-like 1 \| chr1:24748327-24749862 FORWARD LENGTH=511	SoyBase	E_val: 1.00E-75	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009938	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010325	GO-bp	Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0048444	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis	SoyBase	N/A	ISS
GO:2000377	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_G7JMM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7JMM0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF5F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF5F related cluster n=1 Tax=unknown RepID=UPI000233EF5F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13680

Paralog	Evidence	Comments
Glyma05g03020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g127500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13680

Limit To All Plant Sequences

>Glyma17g13680.1   sequence type=CDS   gene model=Glyma17g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCCTCTTTATAGTGCCTTCAACGGCGAAATCGATGGCGAAAATCTCCCTTTAGCTTTTGATATCTGGGCAACCAATCTATGGGCCTATGGCTATTATCCTCATCAACCTGCTATATCGGAGAATAGTTCTTCTAAATTGGTTGATTTCCCCTTTTGCGATGGCACCATCATCAGGGATAACAAAAGGGTCAAGAGAACCGTGTGTTTCCCCATTTATAACAGCGTTAGTTGCCATAGTTTCTTCAACACCAACAGCAGTAGTAGGAATAGCATACCAAAACTCCACTTCAGAGATCACATACGGACTTACACTCAAAGATATCTCGCAGCTGAACCCGTAGAGGAGGCATCAGAAGATACAAACAGTTCAGAAAGTAGTGGAGGCGAAGAAGATGGGTGTGCTGATGGAGTGAGGCTTGTTCAGCTTCTAATAGCGTGTGCGGAAGCGGTGGCTTGCCGCGACAAGTCACACGCTTCCATATTACTTTCCGAACTTAAAGCGAATGCTTTAGTGTTCGGATCCTCATTCCAAAGAGTTGCTTCCTGTTTCGTCCAAGGCCTCACCGAGAGGCTCAATCTGATTCAGCCCATCGGGTCCGCGGGCCCGATGATGGCACCCGCCATGAACATCATGGACGCCGCCTCGGACGAAATGGAGGAAGCATACAGGTTGGTTTATGAACTGTGTCCGCACATCCAGTTCGGACACTATTTGGCTAATTCCACAGTATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTCGTGGACCTAGGCATGAGTCTTGGTCTAAGACATGGACACCAATGGAGAGCTCTGATCCAGAGTCTCGCCAACCGTGCAAGTGGCGAACGCGTTCGTCGCCTGCGGATCACGGGGGTGGGACTCTGTGTCAGACTTCAAACCATTGGAGAAGAACTCTCCGTATATGCTAACAATTTGGGTATCAACTTGGAGTTCTCAGTGGTTAATAAGAATTTGGAAAATCTGAAACCAGAGGACATAGAAGTGAGGGAAGAAGAAGTTCTTGTGGTGAACAGCATTCTGCAGCTTCATTGCGTGGTGAAGGAGAGCCGCGGGGCTTTGAATTCGGTGCTGCAGATGATTCACGGGCTTGGACCCAAAGTGTTGGTGATGGTTGAGCAGGACTCGAGTCATAATGGACCCTTTTTTCTAGGGAGGTTTATGGAATCATTGCACTATTACTCTTCAATTTTTGACTCGTTGGATGTTATGCTGCCAAAGTATGACACTAAGAGGGCAAAGATGGAGCAGTTTTACTTTGCCGAGGAAATAAAGAACATTGTGAGCTGTGAGGGGCCGTTGAGAATGGAGAGGCACGAGAGGGTGGACCAGTGGAGAAGGAGAATGAGCAGAGCTGGGTTTCAAGCTGCACCTATAAAGATGGTGGCTCAGTCTAAGCAGTGGCTTCTCAAGAACAAGGTTTGTGAGGGTTATACTGTTGTGGAAGAGAAGGGGTGTTTGGTTTTTGGATGGAAGTCGAGGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA

Predicted protein sequences of Glyma17g13680

Limit To All Plant Sequences

>Glyma17g13680.1   sequence type=predicted peptide   gene model=Glyma17g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPLYSAFNGEIDGENLPLAFDIWATNLWAYGYYPHQPAISENSSSKLVDFPFCDGTIIRDNKRVKRTVCFPIYNSVSCHSFFNTNSSSRNSIPKLHFRDHIRTYTQRYLAAEPVEEASEDTNSSESSGGEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLTERLNLIQPIGSAGPMMAPAMNIMDAASDEMEEAYRLVYELCPHIQFGHYLANSTVLEAFEGESFVHVVDLGMSLGLRHGHQWRALIQSLANRASGERVRRLRITGVGLCVRLQTIGEELSVYANNLGINLEFSVVNKNLENLKPEDIEVREEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSSIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQSKQWLLKNKVCEGYTVVEEKGCLVFGWKSRPIVAVSCWKC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain