SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24820 | AT | Annotation by Michelle Graham. TAIR10: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr4:12790471-12792599 REVERSE LENGTH=387 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008541 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0687 | KOG | 26S proteasome regulatory complex, subunit RPN7/PSMD6 | JGI | ISS | |
| PTHR14145 | Panther | 26S PROTESOME SUBUNIT 6 | JGI | ISS | |
| PTHR14145:SF1 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 | JGI | ISS | |
| PF01399 | PFAM | PCI domain | JGI | ISS | |
| PF10602 | PFAM | 26S proteasome subunit RPN7 | JGI | ISS | |
| UniRef100_C6TIT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TIT1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JMM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7JMM6_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma17g13640 not represented in the dataset |
Glyma17g13640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g127100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13640.1 sequence type=CDS gene model=Glyma17g13640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGAGAAGAGGGTTCTCAGCAGCCACAGTTGGTGCTCGCGGACAAGCTATTCCTTCTCCGGCAACCCGATGTGCAAGACATTGACAAGGTTCGCTACAAAGAGGATGTCTTCACTCATGTCAAGGAAAACGATATGGTCCCTCTGTACGAAACCCTAGTCGCTGATTCCGTGTTGGACTTGGATCGTGCCCTTTTGGACTCTATGCGCGCTAAAATTGACGACGAGCTCACCAAGCTCGACGAAAAGATTGCTGATGCCGAGGAAAACTTAGGAGAGAGTGAAGTTCGTGAGGCTCATTTGGCAAAATCCTTGTTTTTCATCCGGATTATGGACAAGGAGAAAGCCTTGGAACATCTGAAGGTAACAGAAACCAAGACAGTTGCAGTTGGCCAGAAAATGGACTTGGTGTTTTATACATTGCAGCTTGGTTTCTTTGACATGGATTTTGATCTCATTTCCAAAAGCATAGACAAAGCCAAAAACTTGTTTGAGGAAGGTGGTGATTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTGTACTGCATGTCCACTCGAAATTTCAAGAAGGCTGCCAAGTTATTTTTGGATTCTATTTCAACCTTCACCACCTATGAACTTTTTCCCTATGACACCTTTATATTTTATACTGTTTTGACCAGCATTATATCATTGGATAGAGTTTCCCTAAAGCAAAAGGTAGTAGATGCTCCAGAGATCTTGACAGTGATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTATATGATTGCCAATACAAGTCTTTTTTCTCAGCATTTGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATCTGCATCCACACTTCCGTTATTACATGAGGGAGGTCAGAACAGTTGTTTATTCCCAATTTTTGGAATCTTACAAGAGTGTGACAATTGAAGCCATGGCAAAAGCCTTTGGAGTGACAGTAGATTTCATTGATGTGGAGCTATCACGTTTTATTGCAGCAGGGAAGCTTCATTGTAAGATTGATAAAGTTGCAGGTGTTCTTGAAACTAATCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTGCTGAATCGGATCCAGAAATTGTCACGTGTGATAGATCTTTAG
>Glyma17g13640.1 sequence type=predicted peptide gene model=Glyma17g13640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGEEGSQQPQLVLADKLFLLRQPDVQDIDKVRYKEDVFTHVKENDMVPLYETLVADSVLDLDRALLDSMRAKIDDELTKLDEKIADAEENLGESEVREAHLAKSLFFIRIMDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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