SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63190 | AT | Annotation by Michelle Graham. TAIR10: MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0403 | KOG | Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain | JGI | ISS | |
| PTHR12626 | Panther | PROGRAMMED CELL DEATH 4 | JGI | ISS | |
| PF02847 | PFAM | MA3 domain | JGI | ISS | |
| UniRef100_G7JNQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 4 gamma n=1 Tax=Medicago truncatula RepID=G7JNQ7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUL3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUL3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g13570 not represented in the dataset |
Glyma17g13570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g126700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13570.1 sequence type=CDS gene model=Glyma17g13570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGAATCTGTCTTCGTCGCCGGGAGTCTCCGTCGTCCTTGCTTTCTGACCATCATGTGAAAGCCCCTGCTGGTGGTAAGTCACAAACCTCTGGGATAGCCGTGAGGCATGTGCGTCGGTCGCACTCGGGAAAGTATGGGAAGGTGAAGAAGGATGGTGCTGGTGGTAAGGGTACTTGGGGAAAATTGCTTGATACAGATATTGATTCTCACATAGACCGGAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTGGTTGGAACTACTGTTGCTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTCGAATTGGCATCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAACGCCTTGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATCAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTTATTGAATCTTCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGACATCCTTGCATTATTCTTAGCACGAGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCTAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATCCAAACTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCGGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAAGAAGTGAAGAAGAAGATAGGTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAGGCCTGTAGATGTATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTTAAGAGGGCTTTGATACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAGTTATTAAAAGAAGCAGCTGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGGGAAATCCAAGAAGATGAGAAGGTGAGAAAGTACAAAAAGGAATCTGTAACTATAATTCATGAGTATTTCCTTTCTGACGACATTCCTGAACTGATTCGAAGTCTTGAAGATCTTGGAGCACCTGAGTATAATCCAATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAGAACAGGGAAAAGGAAATGGCCTCTGTACTGCTCTCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCTTGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTGGCTCTGTTCTTAGCTCGGGCTGTTATTGATGATGTATTGGCTCCACTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATTGCTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGCTGGGGTGGAGGGACTGGTTGGGCTGTGGAGGATGCCAAGGACAAAATCATGAAGCTCTTAGAAGAGTACGAAAGTGGCGGGGTTGTGAGTGAAGCTTGCCAATGCATCCGTGATCTGGGAATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGATTATGGCGATGGAGAAAAAGAATGATCATATGCTAGATCTACTGCAGGAGTGCTTCAGTGAGGGCCTGATCACCATTAATCAGATGACAAAAGGTTTCACCCGAATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCCAAGGAGAAATTTGGCTTCTATGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCCTTATTTGATTCGCCTGCCACAGATGCCTAA
>Glyma17g13570.1 sequence type=predicted peptide gene model=Glyma17g13570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRICLRRRESPSSLLSDHHVKAPAGGKSQTSGIAVRHVRRSHSGKYGKVKKDGAGGKGTWGKLLDTDIDSHIDRNDPNYDSGEEPYQLVGTTVADPLDEFKKAVVSIIEEYFSNGDVELASSDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESSDDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIGDLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALILAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQEDEKVRKYKKESVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVLLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDHMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPLFDSPATDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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