SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48360 | AT | Annotation by Michelle Graham. TAIR10: BTB and TAZ domain protein 2 | chr3:17908482-17910471 REVERSE LENGTH=364 | SoyBase | E_val: 4.00E-128 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009743 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0051973 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of telomerase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity | SoyBase | N/A | ISS |
| GO:0004402 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1778 | KOG | CREB binding protein/P300 and related TAZ Zn-finger proteins | JGI | ISS | |
| PTHR24413 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24413:SF192 | Panther | JGI | ISS | ||
| PF00651 | PFAM | BTB/POZ domain | JGI | ISS | |
| PF02135 | PFAM | TAZ zinc finger | JGI | ISS | |
| UniRef100_G7JMM8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Speckle-type POZ protein n=1 Tax=Medicago truncatula RepID=G7JMM8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D9F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D9F1 related cluster n=1 Tax=unknown RepID=UPI000189D9F1 | SoyBase | E_val: 0 | ISS |
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Glyma17g13540 not represented in the dataset |
Glyma17g13540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02863 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g126400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13540.2 sequence type=CDS gene model=Glyma17g13540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGACAGCAATGCGGCACGTGGTTCATTGCTCAAACAAAAGTTTCCGTGTTTTGCAACTATATATACTTTACATTCATCCCCCATGTCTGCTTCTTTCGTTCTATAATTCTTCATTGCTCTCAATTATCAATGGCTCCCCAAACCATTTCCATTCTCAACCTCTTACCAGAACCTGATGTCTTCATTCACACTTCCCATGGAACACGCATTCCAGCCCACGCACCCATTCTGGCTTCTATGTCCCCGGTTCTGGAGAACTTGATAGATCGCCCACGTAAGCATCGGAGCTCCGAGAGAATAATCCAAATCCACGGCGTCCCCTGCGACGCTGTCACCGCCTTCGTCCGATTCCTCTACTCCTCCAGGTGTACGGAGGAAGAGATTGACCAGTACGGGATGCACCTCCTTGCATTGTCCCACGTGTACATGGTGCAGCAACTGAAACAGAGGTGCATCAAGGGTTTGACCCACCGTTTGACGACGGAGAGCGTCGTCGACGTGCTGCAACTCGCGCGTCTCTGCGACGCGCCGGATCTCCACCTCCGCTGCATGAAGCTCCTCGCCAAGAATTTCAAGGCGGTGGAAGCAACCGAGGGATGGAAGTTCCTCGTGAAACACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAACAAGGAAAAAGAAATCGAGGAGGTATAGGATGGAACAGGGGATATACGCGGAGCTGAGCGAGGCGATGGAGTGTTTGGAACACATATGCTATGAGGGGTGCACCCACGTTGGACCGTACGATGCGGAGGTGAAGAGGGAGAGGACGCCGTGTGGGAGATTCGCCACGTGCCAGGGTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGAGAAGAAGGTTCGCGGTGGCTGCGTGCGGTGCAAGAGAATGTGGCAGCTCTTTCGACTCCATTCCTATGTTTGTCACGACACCGATTCCTCCTGCAAGGTTCCCTTTTGCAGGCAATTTCAATTGAGAATGCAGCAAGAGAAAAGGAAAGATGATGCTAAGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCATTGTCACTGCCAAAGAGGAAGCGAGATGAAGAAACAAGAGTGACGATGGACAATCCCGGGATTAGAAGTTTTAAATTACTATGA
>Glyma17g13540.2 sequence type=predicted peptide gene model=Glyma17g13540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRQQCGTWFIAQTKVSVFCNYIYFTFIPHVCFFRSIILHCSQLSMAPQTISILNLLPEPDVFIHTSHGTRIPAHAPILASMSPVLENLIDRPRKHRSSERIIQIHGVPCDAVTAFVRFLYSSRCTEEEIDQYGMHLLALSHVYMVQQLKQRCIKGLTHRLTTESVVDVLQLARLCDAPDLHLRCMKLLAKNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRRYRMEQGIYAELSEAMECLEHICYEGCTHVGPYDAEVKRERTPCGRFATCQGLQVLIRHFATCEKKVRGGCVRCKRMWQLFRLHSYVCHDTDSSCKVPFCRQFQLRMQQEKRKDDAKWKLLARKVASAKVMSSLSLPKRKRDEETRVTMDNPGIRSFKLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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